Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella loihica PV-4

 Score =  101 bits (252), Expect = 8e-26
 Identities = 87/335 (25%), Positives = 156/335 (46%), Gaps = 39/335 (11%)

Query: 213 EIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQ 272
           +I     +D   LL+   A LL   G  TV V+ +   L ++   + +  ++  + +   
Sbjct: 372 QINYAKATDIAELLKGDDASLLSARG--TVAVDDRTNTLLVKDTEESLENIHRLVEVLDI 429

Query: 273 RMHRQVILEAKILEVTLSDGYQQGINW-------SKAFSSN--GANYKIGSGSITQDSNG 323
            + RQV++E++++ V        GI W       SK  S +  GAN  I +G +     G
Sbjct: 430 PI-RQVLIESRMVTVKDDVSEDLGIKWGITDQQGSKGTSGSLEGAN-DIANGVVPDI--G 485

Query: 324 NPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAV 383
           + +   LP   A    +      +      D  +S +  +    +++SPR+T SN + A 
Sbjct: 486 DRLNVNLPAAVANPTSIAFHVAKLADGTLLDLELSALEQESKGEIIASPRITTSNQKAAY 545

Query: 384 IKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAV 443
           I+ G +  YV   SS   T    +A            +SL VTPQI     V+L      
Sbjct: 546 IEQGVEIPYVESASSGAATVQFKKAV-----------LSLRVTPQITPDNRVILD----- 589

Query: 444 IEVEQQTKKILYRSEEIELPLARSSIRESDSV---IRAKDGDVVVIGGLMKSNTVDQVSK 500
           +E+ Q ++      + ++ PL ++   ++  +   +    G+ +V+GG+ +   +++VSK
Sbjct: 590 LEITQDSQ-----GKTVDTPLGQAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLINRVSK 644

Query: 501 VPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           VP LGD+P LG+LFRNTT   ++ EL+I + P ++
Sbjct: 645 VPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKII 679



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 76  EDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYGFEVVKEGKV 135
           + +  +     +     ++      V G ITL L DV  D+AL ++    G +   EG +
Sbjct: 278 QSISVRTVLQIIADYNNFNLVTSDTVEGDITLRLDDVPWDQALDLILQTKGLDKRIEGNI 337

Query: 136 IQVYPA 141
           + V PA
Sbjct: 338 LMVAPA 343