Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., MSHA biogenesis protein MshL (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  525 bits (1352), Expect = e-153
 Identities = 284/559 (50%), Positives = 395/559 (70%), Gaps = 25/559 (4%)

Query: 13  LVGCSMGHR-DPVEAKQALN---QAINETNSRQIDQLPPSVEADLMPD--MDTLTASEPK 66
           L+ C    R  P  +K+AL+   Q  ++        +P +V+ +L  +  M  LTA   +
Sbjct: 15  LMACQTTDRPQPTASKEALSASMQTASQPTPPPPATMPDAVQRELNANTLMGGLTAPM-E 73

Query: 67  TLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYG 126
           T +R  + A DV+A+ FF SLVQGT +S A+HP V G I+L+L  VTL EA+ VV D+YG
Sbjct: 74  TERRIDVSAHDVDARVFFPSLVQGTPFSVAVHPDVQGTISLSLKGVTLSEAIQVVEDIYG 133

Query: 127 FEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTIT---NTDTNNSNSSSS 183
           +EV +EG++++V+PAG+RT T P++YL  +R G SLTS+++G I+   N++ NN NS+S+
Sbjct: 134 YEVSREGRILRVFPAGMRTETFPLNYLYMERDGLSLTSVSSGRISDNNNSNNNNGNSNSN 193

Query: 184 SSSSISSNSSSDGSS-SNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGG-QT 241
           + +S  +NS+S+ S+ SN++SN SD+  GT I +  ++DFW  L++ +  ++G +GG + 
Sbjct: 194 NGNSGGNNSNSNSSNGSNASSNSSDSTNGTFIRSRTKTDFWGELKETLTAIVGDTGGGRQ 253

Query: 242 VIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSK 301
           V+V PQAG++T+RAYP+E+RQV  FL  ++  + RQVILEAKILEVTLSDGYQQGI W  
Sbjct: 254 VVVTPQAGLVTIRAYPNELRQVRAFLSSAESHLQRQVILEAKILEVTLSDGYQQGIQWDN 313

Query: 302 AFSSNGANYKIGSGSITQDSNGNPITSVLPGL-DAIGNLLGGQSNVVISSGSFDAVISFM 360
                G            ++N N  TS   GL D I + LGG +++ I    F+ +IS +
Sbjct: 314 VLGHVG------------NTNINFGTSAGTGLSDKITSSLGGVTSLSIKGSDFNTMISLL 361

Query: 361 ATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSG 420
            TQGD++VLSSPRVTASNNQKAVIKVGTDEY+VTD+SS    G     +P + LTPFFSG
Sbjct: 362 DTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFSG 421

Query: 421 ISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKD 480
           I+LDVTPQID  GNVLLHVHP+VI+V++QTK I   +E +ELPLA+S IRESD+VIRA  
Sbjct: 422 IALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQSEIRESDTVIRAAS 481

Query: 481 GDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVVGVNTW 540
           GDVVVIGGLMKS  ++ VS+VP LGD+P +G LF+N +K  +KTEL+I+LKPTVVG +TW
Sbjct: 482 GDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTELIIMLKPTVVGNDTW 541

Query: 541 QKELERSRSLLQEWFPDSQ 559
           + ELERS++LL  W+P+++
Sbjct: 542 KTELERSKTLLDRWYPENK 560