Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 704 a.a., general secretion pathway protein D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  113 bits (283), Expect = 2e-29
 Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 46/332 (13%)

Query: 231 AQLLGGSGGQT---VIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILE 286
           AQ  GG   +    ++ +     L + A PD++R +     I+Q  + R QV++EA I+E
Sbjct: 302 AQAAGGGKRRNEINIMAHTDTNALVISAEPDQMRTIESV--INQLDIRRAQVLVEAIIVE 359

Query: 287 VTLSDGYQQGINWSKAFSSNGANY--------KIGSGSI-TQDSNGNPITSVLPG----- 332
           V   D    G+ W+ A +  G  +        +IG+G    QD  G  IT+   G     
Sbjct: 360 VAEGDNVGFGVQWA-AKAGGGTQFNNLGPTIGEIGAGIWQAQDKEGTYITNPSTGEVIGQ 418

Query: 333 -------LDAIGNLLGGQSNVV--ISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAV 383
                  +  +   LG  + +   ++ G F A++  ++   + NVL++P +T  +NQ+A 
Sbjct: 419 NPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVSADTNSNVLATPSITTLDNQEAS 478

Query: 384 IKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAV 443
             VG +   +T       T  +  ++P  T+     G+ L V PQI++   V L +   V
Sbjct: 479 FIVGDEVPILTG-----STASSNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEV 533

Query: 444 IEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPF 503
             V   T         +++  A    R   + + A  G +VV+GGL+     + + KVPF
Sbjct: 534 SGVNGNTG--------VDISFAT---RRLTTTVMADSGQIVVLGGLINEEVQESIQKVPF 582

Query: 504 LGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           LGD+P LGHLF++++    K  L+I +KPT++
Sbjct: 583 LGDIPILGHLFKSSSSKKTKKNLMIFIKPTII 614