Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., type II secretion system protein GspD from Klebsiella michiganensis M5al

 Score =  105 bits (262), Expect = 6e-27
 Identities = 80/298 (26%), Positives = 144/298 (48%), Gaps = 29/298 (9%)

Query: 247 QAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGINWSKA--- 302
           Q   L + A PD +  +     I+Q  + R QV++EA I EV  +DG   GI W+     
Sbjct: 317 QTNALIVTAAPDVMNDLERV--IAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAG 374

Query: 303 ---FSSNGANYKIG-SGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDAVIS 358
              F+++G       +G+   + +G   +S+   L +   +  G        G++  +++
Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG-----FYQGNWAMLLT 429

Query: 359 FMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFF 418
            +++    ++L++P +   +N +A   VG +   +T   S   +GDN   + +       
Sbjct: 430 ALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT--GSQTTSGDNIFNTVERKTV--- 484

Query: 419 SGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL-ARSSIRESDSVIR 477
            GI L V PQI++  +VLL       E+EQ+   +   +      L A  + R  ++ + 
Sbjct: 485 -GIKLKVKPQINEGDSVLL-------EIEQEVSSVADAASSTSSDLGATFNTRTVNNAVL 536

Query: 478 AKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
              G+ VV+GGL+  +  D   KVP LGD+P +G LFR+T+K   K  L++ ++PTV+
Sbjct: 537 VGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVI 594