Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., type II secretion system secretin GspD from Ralstonia sp. UNC404CL21Col

 Score =  127 bits (320), Expect = 1e-33
 Identities = 110/390 (28%), Positives = 165/390 (42%), Gaps = 55/390 (14%)

Query: 163 TSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDF 222
           TS   G ++N    N+ +++  S S S + S  GSSS   S      G     TT     
Sbjct: 347 TSQPAGGVSNLQNQNTQNTNYGSGSGSGSGSGGGSSSFRASF-----GQNNTPTT----- 396

Query: 223 WPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEA 282
                           G  +  +P    L + A     R +   +     R   QV +E+
Sbjct: 397 ----------------GGIIQADPATNALIITASEPVYRNLRAVIDDLDAR-RAQVYIES 439

Query: 283 KILEVTLSDGYQQGINW------SKAFSSNGANYKIGSGSITQDSN-----------GNP 325
            I+EVT +   Q GI W         F   G NY  GSG++   +            G  
Sbjct: 440 MIVEVTATKASQLGIQWLVGGGGPGTFIGGGTNYGTGSGNLISLAGTIAAIGSGGIGGTA 499

Query: 326 ITSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIK 385
             + L  L+ +G L GG   V         ++S + + G +NVLS+P +   +N++A I 
Sbjct: 500 AQTALTSLN-VGQLNGGNFGVFNRGSGLGVLLSALGSDGSVNVLSTPNLITLDNEEAKIL 558

Query: 386 VGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIE 445
           +G +    T   S   TG +A  SP  T      GI+L V PQI D G V + +      
Sbjct: 559 IGQNVPITT--GSYAQTGTSASVSPFQTFDRKDVGITLRVKPQITDGGLVKMQIFQESSA 616

Query: 446 VEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLG 505
           V   T+               +++R  ++ + A DG VVV+GGL++ N  D   KVP LG
Sbjct: 617 VVPGTQNATQGPT--------TNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLG 668

Query: 506 DVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           D+P LG LFR+  K   KT L++ L+P ++
Sbjct: 669 DIPILGALFRSENKTRVKTNLLVFLRPIIL 698