Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN

 Score =  108 bits (271), Expect = 6e-28
 Identities = 113/411 (27%), Positives = 174/411 (42%), Gaps = 56/411 (13%)

Query: 155 FKRTGRSLTSITTGTITNTDTNNS-----NSSSSSSSSISSNSSSDGSSS-NSNSNRSDA 208
           F + G S +S  +    + + NNS     N+S+ SS +    S   GSSS  S    S +
Sbjct: 284 FGKGGDSGSSSNSNDANSFNQNNSGGIGGNNSTGSSGTPPLPSGGLGSSSLASPMGGSGS 343

Query: 209 RGGTEIETTNESDFWPLLEKAVAQLLGG-----SGGQTVIVNPQAGVL-TLRAYPDEIRQ 262
            GG     +N   F    EK+     GG     S   ++I+     V   LRA  D++  
Sbjct: 344 GGGYGAGGSNNGGFGNDKEKSDDNQQGGMIQADSATNSLIITAAEPVYRNLRAVIDQL-- 401

Query: 263 VNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSN 322
                         QV LEA I+E+  +     GI W  A +S  A   + +GS     N
Sbjct: 402 ---------DARRAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVN 452

Query: 323 GNPITSVLPGLDAIGNLLGGQSNVVISSG-------------SFDAVISFMATQGDLNVL 369
              +T+      + G L G   N  +  G                A++  ++   D NVL
Sbjct: 453 ---LTAAAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVL 509

Query: 370 SSPRVTASNNQKAVIKVGTDEYYVT----DLSSVVGTGD-NAQASPDITLTPFFSGISLD 424
           S+P +   +N++A I VGT+    T    +L+S   T   N     D+       G++L 
Sbjct: 510 STPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDV-------GLTLH 562

Query: 425 VTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVV 484
           V PQI D G + L ++     +   T          E      + R   S + A +G+++
Sbjct: 563 VKPQITDGGILKLQLYTEDSAIVTGTNNAATNPAGPEF-----TKRSIQSTVLADNGEII 617

Query: 485 VIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           V+GGLM+ N     SKVP LGD+P +G LFR+  K   KT L++ L+P ++
Sbjct: 618 VLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII 668