Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (283), Expect = 2e-29
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 43/318 (13%)

Query: 242 VIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGINWS 300
           ++ +     L + A PD++R +     I+Q  + R QV++EA I+EV   D    G+ W+
Sbjct: 314 IMAHTDTNALVISAEPDQMRTIESV--INQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWA 371

Query: 301 KAFSSNGANY--------KIGSGSI-TQDSNGNPITSVLPG------------LDAIGNL 339
            A +  G  +        +IG+G    QD  G  IT+   G            +  +   
Sbjct: 372 -AKADGGTQFNNLGPTIGEIGAGIWQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQA 430

Query: 340 LGGQSNVV--ISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 397
           LG  + +   ++ G F A++  ++   + NVL++P +T  +NQ+A   VG +   +T   
Sbjct: 431 LGKVNGMAWGVAMGDFGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTG-- 488

Query: 398 SVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRS 457
               T  +  ++P  T+     G+ L V PQI++   V L +   V  V   T       
Sbjct: 489 ---STASSNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTG------ 539

Query: 458 EEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNT 517
             +++  A    R   + + A  G +VV+GGL+     + V KVPFLGD+P LGHLF+++
Sbjct: 540 --VDISFAT---RRLTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDIPVLGHLFKSS 594

Query: 518 TKLTQKTELVILLKPTVV 535
           +    K  L+I +KPT++
Sbjct: 595 SSKKTKKNLMIFIKPTII 612