Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N2E2

 Score =  140 bits (354), Expect = 1e-37
 Identities = 114/456 (25%), Positives = 208/456 (45%), Gaps = 17/456 (3%)

Query: 204 EALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALL--ESGAHGG 261
           +A+++++E+L+   QE++     +R +++ D LTG ANR  ++ +L + +   E  + G 
Sbjct: 209 QAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGY 268

Query: 262 VMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDA--ILSRYYEDVFALFIPH 319
           +++LRV DL    +    +  D+ +  VGE L     RYP+   +++R     FA+  P 
Sbjct: 269 LLLLRVKDLAGLNQRLGGQRTDQLLQAVGEQLLRECARYPETHNLVTRIRGGEFAVLAPG 328

Query: 320 QGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQ 379
              ++  Q+A      +  ++        +   IG+  +  G+    ++   + AL  A+
Sbjct: 329 LVREEALQLAQNLEAALASLHATGATDVASVASIGLAPFVHGDSPQAVLQLGDQALAQAE 388

Query: 380 LQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYE 439
            QG   W+                W TL +Q L  +   LY Q    ++A   +  LHY+
Sbjct: 389 SQGEPGWACLDHSAVASVGDDHHAWHTLLDQALNHQRFELYFQPV--VAARDTQVVLHYK 446

Query: 440 LFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVVP 499
           + +R+ D Q   + A RF   LE  G+ A LDR +   V+  +   E  + L++NL    
Sbjct: 447 VLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLEQVLRQMAGHE--QSLALNLSSAT 504

Query: 500 FNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQA 559
             D +    I  E+++   +L + L+ E  E  L      +  + R L  LG  + + + 
Sbjct: 505 LADPQALNKIF-EILRAHSNLGSRLTLEIGEEQLPEQA-VLEQLTRRLRELGFSLSLQRF 562

Query: 560 GRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETT 619
           G        +  L + YLK+  S I+ IDQ  + +LF+ ++          ++A  VET 
Sbjct: 563 GGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETE 622

Query: 620 QEWQTLQMLGVSGVQGRLF-------DEEQQMLPPL 648
            E   ++ +G+ GVQG+L        D E  ++PPL
Sbjct: 623 GELAVIREMGLFGVQGQLVGEPRRWGDPETLIVPPL 658