Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  123 bits (309), Expect = 2e-32
 Identities = 131/516 (25%), Positives = 220/516 (42%), Gaps = 33/516 (6%)

Query: 139 YSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRVEQHAKGDPREW 198
           ++L  +W +TLA LL  + L  G       LLG  LL  + R  L   VEQ      RE+
Sbjct: 139 FALAKLWDSTLATLL--WLLACGAV---SALLGGWLLRSQLRP-LDRMVEQAHAITQREF 192

Query: 199 ------PFTAS-----EALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDS 247
                 P T       +A+++++++L+    E +     +R Q + D LTG A+R L D 
Sbjct: 193 ITLPHLPRTPELRRVVQAMNQMVDKLKTLFAEEAERSEKLRQQAYQDDLTGLASRRLLDL 252

Query: 248 KLESALL--ESGAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRY--PDA 303
           +L + L   E  A G +++L++ DL    +    +  D  I+ +GE L  +  R    D 
Sbjct: 253 RLSTQLAPDEHHAEGYLLLLQIHDLNGLNQRYGGQFSDRLIVAIGEQLMRLKSRRGRADW 312

Query: 304 ILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGER 363
           + +R     F L  P     ++  +       +E + P          HIGVT ++ GE 
Sbjct: 313 LAARNRGSEFVLLAPGLHQDEVTPLLNALSDELETLRPTGSTDSIPVAHIGVTAFRLGET 372

Query: 364 RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQA 423
              +++  + AL  AQ  G  AW   +     Q  R    W    +Q L    + LY Q 
Sbjct: 373 PQDVLERADQALAQAQA-GNTAWQLLEG-YWAQPLRDQHSWHETLQQALADSALALYVQP 430

Query: 424 CYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLK 483
                A    + LH+++ AR+       L A RF   LE +G+ A  D  +   V++ LK
Sbjct: 431 VGL--AAEPAQILHHKVLARLPIASGEPLTAGRFLPWLERLGWAARFDYIMLELVIARLK 488

Query: 484 RSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVN--HLDYMR 541
            +   +PL+++L      D R+ + +   L   P    + L  E    HL    HL +  
Sbjct: 489 LAP--QPLALSLSAATLRDARHLQQVFALLHSNPAEA-SHLILELDALHLPVDVHLQHWS 545

Query: 542 PIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLV 601
             +R     G ++ +   G       ++  L + ++K+  + I+ ID+  + +LF+ ++ 
Sbjct: 546 QKVRTT---GTRLGLQHFGGDFSKIGHLAHLGLAHVKVDGAYIRGIDKDEDKRLFIEAIY 602

Query: 602 GVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRL 637
                    ++A  VET  E + L  LGV G  G L
Sbjct: 603 RTTNSIDLPLIAEMVETQGELKVLTELGVRGAMGHL 638