Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1009 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Acidovorax sp. GW101-3H11

 Score =  115 bits (287), Expect = 1e-29
 Identities = 104/438 (23%), Positives = 184/438 (42%), Gaps = 35/438 (7%)

Query: 234  DQLTGTANRVLYDSKLESALLESGAHG------------GVMMLRVDDLESAREESPKRT 281
            D LTG  NR  ++ +L     E   HG             ++   +D+ ++  +    R 
Sbjct: 579  DALTGLYNRRRFEDELLRFFREFDRHGQHDRRDQHERQGALLFFDLDEFKAINDTFGHRI 638

Query: 282  LDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINP 341
             D  ++ VG  +  +V++     L R   D FA+ +PH   +D  ++A + ++ I +   
Sbjct: 639  GDSVLVRVGSDVQALVRQ--TETLCRLGGDEFAVLMPHASVEDAQRLAERIVRAISQ--G 694

Query: 342  PEPLPEDNW---FHIGVTMY-QEGERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQL-Q 396
            P  +   N      +G+ +  Q  +    ++   + A+  A+  G N WS ++      Q
Sbjct: 695  PFCIEGQNLRLTTSLGIALAPQHADNAQELVAHADAAMYQAKHLGKNCWSLYRPDHHASQ 754

Query: 397  EDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGILKASR 456
            E    + W     + L    + L+ Q  Y  +     E  H E+  R++D       A+R
Sbjct: 755  ETITRLAWNERISRALERNLLRLHYQGVYDATTG---ELAHLEVLVRMRDEAD----ATR 807

Query: 457  FSSALETVGYEAM------LDRAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRYARWIR 510
                ++ +GY         +DR V    ++ L     +  L++N+    F+D     +I 
Sbjct: 808  LIGPMQFIGYAEKSGKILEIDRWVARESIALLGAQPQLPALAINISARSFDDPSLPAYIA 867

Query: 511  NELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIK 570
             +L     + +  L  E +E   V+ L      I  L   GC++ +   G    S  Y+K
Sbjct: 868  AQLQAAGVAPQRLL-VELTETSAVSDLRDAERFIDTLRHTGCQVCLDDFGTGFASFAYLK 926

Query: 571  DLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQMLGV 630
             LKV+ LK+    I+ +   H+NQ+FVR+++ V  G     VA  VE+ +    L+ LGV
Sbjct: 927  HLKVDVLKIDGLFIRNLTHEHDNQVFVRAIIDVARGLGRRTVAEFVESQEILDMLKTLGV 986

Query: 631  SGVQGRLFDEEQQMLPPL 648
              VQG   D+ Q   P L
Sbjct: 987  DMVQGYHLDQPQAEHPAL 1004