Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Acidovorax sp. GW101-3H11

 Score = 92.8 bits (229), Expect = 6e-23
 Identities = 107/455 (23%), Positives = 189/455 (41%), Gaps = 29/455 (6%)

Query: 219 ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALL---ESGAHGGVMMLRVDDLESARE 275
           ER + ++ I    F D LTG  NR L   +L+ A L    S + G ++ + +D+ +   +
Sbjct: 394 ERKQVESQIERLAFYDSLTGLPNRRLLVDRLQHATLAVARSDSQGALLFIDLDNFKDLND 453

Query: 276 ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPH---QGSKDIAQVATQA 332
                T D+ +++V + L   V R  D + +R+  D F + +           A+ A  A
Sbjct: 454 TLGHDTGDQLLLQVAQRLKACV-RESDTV-ARFGGDEFVVLVEGLSPDADHASAEAALVA 511

Query: 333 IKLIERINPPEPLPEDNWFH---IGVTMY-QEGERRGRIIDEMETALKSAQLQGVNAWSR 388
             +   +  P  L + +      IG+ ++ Q+      ++   + A+  A+  G N    
Sbjct: 512 SHIATTLGKPYVLGDASHHSSPSIGIALFGQQPLSVDELLKHADLAMYQAKAAGRNTQRF 571

Query: 389 FQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQ 448
           F    Q      S     L  + L+ +E++LY    Y+   +G+      E   R + P+
Sbjct: 572 FDPDMQAAVSNRSALEADL-RRGLQEKELVLY----YQPVVDGKGRLQGAEALVRWRHPR 626

Query: 449 QGILKASRFSSALETVGYEAMLDRAVFSSVVSFL---KRSELVEP--LSVNLHVVPFNDK 503
           +G++  + F    E  G    L   V  +  + L    RS L     LSVN+ V  F   
Sbjct: 627 RGMVSPAEFIPLAEQTGLILPLGHWVMQAACAQLVAWSRSSLTRQFFLSVNVSVRQFRQP 686

Query: 504 RYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTI 563
            +   +   L     +    L  E +E+ L+  ++ +   +  L   G    +   G   
Sbjct: 687 DFVEQVLGAL-DATGANPERLKLELTESLLLADVEDIIARMEHLRRYGVGFSLDDFGTGY 745

Query: 564 VSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQ 623
            S  Y+K L ++ LK+ +S ++ +     +   VR+++ +       VVA GVETT + +
Sbjct: 746 SSLSYLKRLPLDQLKIDQSFVRDLQTDPNDAAIVRTILALADSLDLGVVAEGVETTGQLE 805

Query: 624 TLQMLGVSGVQGRLFDEEQQMLPPLPPEPLKRPPR 658
            LQ  G    QG LF        P+PPE L+R  R
Sbjct: 806 FLQRYGCKAFQGYLFGR------PMPPEVLERALR 834