Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 972 a.a., PAS:GGDEF from Pseudomonas syringae pv. syringae B728a

 Score = 93.2 bits (230), Expect = 5e-23
 Identities = 96/419 (22%), Positives = 181/419 (43%), Gaps = 21/419 (5%)

Query: 234 DQLTGTANRVLYDSKLESALLESGAHG---GVMMLRVDDLESAREESPKRTLDEFIIEVG 290
           D LT   NR    + L   +    +      V+ + +D  ++  +       D+ +I+ G
Sbjct: 536 DSLTHLPNRWFLSNYLREIISRKTSAPDAVSVIFIDLDRFKAVNDTMGHSVGDQLLIQAG 595

Query: 291 ECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNW 350
             L + +    +++++R   D F++ + H    + + + + A  ++E +  P  L   + 
Sbjct: 596 RRLKDCIGE--NSVVARLGGDEFSIVVTHSVYSE-SLIKSLATHVVEALGKPFNLGGQDI 652

Query: 351 F---HIGVTMYQ-EGERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRT 406
           F    +G+  Y  +G   G I+   +TA+  A+  G N + +F   +  +     ++  T
Sbjct: 653 FVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNF-KFYNARMNESLTRRLQTET 711

Query: 407 LFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGY 466
           L    L  +E +L+ Q   ++S    R     E   R   P+QG++  + F   LE  G 
Sbjct: 712 LLRGALERDEFILHFQP--KVSLTDGR-ISGLEALLRWNHPEQGMVSPADFIPILEDTGL 768

Query: 467 EAMLDRAVFSSVVSFLKRSE----LVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRT 522
              +   V   V   LKR E     + P+++NL V     K  A  +++  +   + +  
Sbjct: 769 IIPVGVWVIRKVCETLKRWEENHIRLVPIAINLSVRQLQVKGLAETVKH--IVEAYGINP 826

Query: 523 AL-SFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHR 581
           AL  FE +E+ L+   +    I+R +   G  + V   G    S  Y+K   ++ LK+ R
Sbjct: 827 ALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFPLDALKIDR 886

Query: 582 SLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDE 640
           + IK I   HE+    R+++ +       V+A GVET  + + L   G   +QG LF +
Sbjct: 887 AFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQMQGYLFSK 945