Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1278 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score = 94.0 bits (232), Expect = 4e-23
 Identities = 108/451 (23%), Positives = 188/451 (41%), Gaps = 38/451 (8%)

Query: 219  ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVMMLRVDDLE------- 271
            ER   +  I    + D LT   NR L+  +L SAL  +      ++L   DL+       
Sbjct: 831  ERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFKPIND 890

Query: 272  SAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQ 331
            S    +  R L E    +  C+S       D  ++R   D F L +    S++ A    +
Sbjct: 891  SLGHAAGDRMLQEMATRLLACVS------VDDTVARMGGDEFTLLLEPDESREAA--LNR 942

Query: 332  AIKLIERINP----PEPLPEDNWF---HIGVTMY-QEGERRGRIIDEMETALKSAQLQGV 383
            AI + ERI      P  L    +F    IG+ +  Q+G+   +++   +TA+  A+ +G 
Sbjct: 943  AIHVAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGK 1002

Query: 384  NAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFAR 443
            N +  +Q           +   +     L  +E  L+ Q   + S +G+R     E   R
Sbjct: 1003 NNFQFYQADMNATALE-RLELESDLRHALEQKEFTLFYQP--QFSGDGKR-LTGAEALLR 1058

Query: 444  IQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSEL----VEPLSVNLHVVP 499
             + P++G++  + F   LE +G    +   V +     LK        V  +SVN+    
Sbjct: 1059 WRHPRRGLVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVPKVSVNISARQ 1118

Query: 500  FNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQA 559
            F+D +  + I + L Q   S    L  E +E+ L+  ++    I+  L  LG  I V   
Sbjct: 1119 FSDGQLGKRIAHILEQAGLS-PACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDF 1177

Query: 560  GRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETT 619
            G    S +Y+K   ++ LK+ R+ +  +    ++    R+++ +       V+A GVET 
Sbjct: 1178 GTGYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETH 1237

Query: 620  QEWQTLQMLGVSGVQGRLFDEEQQMLPPLPP 650
            ++ + L+      VQG LF        P+PP
Sbjct: 1238 EQLEFLREHDCDEVQGYLFGR------PMPP 1262