Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., putative diguanylate phosphodiesterase (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (324), Expect = 4e-34
 Identities = 103/436 (23%), Positives = 195/436 (44%), Gaps = 16/436 (3%)

Query: 202 ASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKL-ESALLESGAHG 260
           A +AL + I+ L    ++ SR         F D +TG  +R  +  KL E A  +    G
Sbjct: 202 ARQALKQKIDGLHHENEKLSR-------AAFQDPITGFGSRARFTRKLDELAKSQKDLLG 254

Query: 261 GVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQ 320
            + ML+  +L +  +   +   D+++ +V  CL      +PDA   R     FA+F+P+ 
Sbjct: 255 SLAMLQATELGTINQLKGRTAGDDYLAKVAGCLRKAGSPFPDAEFYRISSSDFAVFLPNL 314

Query: 321 GSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQL 380
              D  +       L++       +  ++  + G+  Y+ G     ++   + AL  AQ 
Sbjct: 315 VISDAERFLEPLKTLLDEYQSTSAM--ESIAYTGLVPYKSGVDPVGLLSLSDAALSIAQT 372

Query: 381 QGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYEL 440
            G N++   +K  + QE  G  RW+    +++    +  ++Q      +  E   ++ EL
Sbjct: 373 LGANSFHVLEKFTEDQEI-GDNRWQVAITEIITQRAVRFFQQPIQPCRSEVE---VYREL 428

Query: 441 FARIQDPQQGILKASRFSSALETVGYEAMLDR-AVFSSVVSFLKRSELVEPLSVNLHVVP 499
           FAR  + +  +L  +   +  E  G    LD+  V S+V   L    +     VN+  V 
Sbjct: 429 FARFFNSEGKVLPTATVIAMAERHGLSQELDKLVVLSAVRMLLDNPNMTGAYGVNISAVS 488

Query: 500 FNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQA 559
             D  +  W++ +L+    ++   L  E +E+ L  ++      IR +  +G ++ + + 
Sbjct: 489 ATDDNFVVWLK-DLLTKHRAISNRLVLEINESGLQTNMQGSFRFIREIHSVGTRVSIERF 547

Query: 560 GRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETT 619
           G    S  + ++++ +Y+KL  +  + IDQ   N+ FVR ++ +       V+A GVE  
Sbjct: 548 GMGFTSFKFFREVRPDYIKLDATYSEAIDQDANNKFFVRMMIDIARRIGVRVIACGVERQ 607

Query: 620 QEWQTLQMLGVSGVQG 635
           +E  TL+ L V G+QG
Sbjct: 608 EEKLTLEKLMVDGLQG 623