Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., regulatory protein CsrD (RefSeq) from Shewanella amazonensis SB2B

 Score =  299 bits (766), Expect = 2e-85
 Identities = 183/641 (28%), Positives = 326/641 (50%), Gaps = 14/641 (2%)

Query: 9   TLKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAA 68
           T  L+ +L++F  M++ +  F+  L   +SF +L   +    +  +  ++    +   ++
Sbjct: 4   TRMLTKKLISFWMMSLAAVAFVFLLSALMSFVQLTYRFQQQKVAELETMLVNHYQH-QSS 62

Query: 69  YSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPGYVMHF 128
           + +  W+P ML A   +  +LT     ++ ++    + +     +    L  N    M  
Sbjct: 63  WELDSWLPPMLLAYNTVSFRLTRGDELVFEYQGNLGSDQTVVYERA---LYANDALEMRL 119

Query: 129 KAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRVE 188
           +   P+  +    + +    + ++ +  F+  G  W   +L G E L +R ++IL G+++
Sbjct: 120 ELPRPFSAHRLGWRELMILLVGIVAVAGFVRFGFLWFSAELEGIEALAQRSKLILDGKLD 179

Query: 189 QHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSK 248
           + AK      P   + AL RL+ EL DA +ER+RFD FIRS TFLD  T   NR+   ++
Sbjct: 180 EAAKTPGNGKPRLINRALSRLLAELADAHKERARFDKFIRSNTFLDPQTRIGNRLFLQNR 239

Query: 249 LESALLESG--AHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILS 306
           L +   + G  A G + +L ++DL+  ++E+    + E +      ++ ++Q   ++I +
Sbjct: 240 LNALSSDQGMLAPGVLYLLEMEDLDILQQEAGDEVVLELLHSTINAINLVLQTQANSIFA 299

Query: 307 RYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGR 366
           R   +  A+ +P     +   +A + +K+      P+    DN+FH+G   ++EG+    
Sbjct: 300 RRSHNQLAIVVPQISLVEADALADKLLKICLAQPLPKIEEADNFFHLGGAYFKEGDMPEP 359

Query: 367 IIDEMETALKSAQLQGVNAWSRFQKPKQLQE-DRGSVRWRTLFEQVLRPEEILLYRQACY 425
           ++DE + AL++AQLQG + W  + K    QE  +GSVRWR+  E  L     + + Q   
Sbjct: 360 LLDEADMALRAAQLQGASGWFMYDKGAVDQEFAKGSVRWRSFLENALVNRNFVTFAQPV- 418

Query: 426 RISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRS 485
                G+    H+E+F R++DP   +++A+ F       G    ++R V    +  L   
Sbjct: 419 ---CEGDGSHHHHEIFTRVRDPMGSLVRATLFIPMAVKCGLMPQIERQVVERTLFELMSD 475

Query: 486 E--LVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPI 543
                   S+NL V     + + RW++  L++    L + L FE +E  ++ H   + P 
Sbjct: 476 TGTAKRHYSINLSVDSLTSRAFVRWLQTTLLEYRH-LASRLVFEVTEDMVMKHRSQLEPK 534

Query: 544 IRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGV 603
           + ML  +G +I V   G+ +VST YI++L  N++KLHRS++++ID R ENQLFVRSL+G 
Sbjct: 535 LNMLRKMGSRICVDHVGQQVVSTQYIRELGFNFIKLHRSVVRQIDLRPENQLFVRSLIGS 594

Query: 604 CGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQM 644
              T  +V A GV + +EWQTLQ+LGVS  QG  F + QQ+
Sbjct: 595 LYRTDVQVFAEGVGSFEEWQTLQILGVSAGQGTYFGDPQQI 635