Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1491 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 96.3 bits (238), Expect = 9e-24
 Identities = 95/431 (22%), Positives = 181/431 (41%), Gaps = 20/431 (4%)

Query: 219  ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHG---GVMMLRVDDLESARE 275
            ER R +  +R     D LTG  NR L+ ++L  A+ ++  +     +M L +D  +   +
Sbjct: 1044 ERKRSEADLRRLANYDVLTGLPNRSLFAARLNQAIHKATQNEEKLALMFLDLDRFKHVND 1103

Query: 276  ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKL 335
                   D  ++E    L + +   P+  L R+  D F + I H    D        I  
Sbjct: 1104 SFGHGMGDALLVEAAARLQSCID--PEYTLCRFGGDEFVVLI-HGAEVDTLNHLANTI-- 1158

Query: 336  IERINPPEPLPEDNWF---HIGVTMYQEGERRGR-IIDEMETALKSAQLQGVNAWSRFQK 391
            + +I  P  L    ++    IG++++ +  R+   +I   + A+  A+ +G   +  + +
Sbjct: 1159 LGQIETPFKLFGREFYISTSIGISIWPDDARQPEALIKNADLAMYHAKEEGRGNFQYYSQ 1218

Query: 392  PKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGI 451
             +   E    +R      + L  +E  L+ Q   ++  N + + +  E   R Q P+ G 
Sbjct: 1219 ERNA-EALYHLRLEADLRKALERQEFCLHYQP--QVDVNDDNQVIGMEALLRWQHPKDGY 1275

Query: 452  LKASRFSSALETVGYEAMLDRAVFSSV----VSFLKRSELVEPLSVNLHVVPFNDKRYAR 507
            ++   F    E  G    +D+ V          + ++ +    +SVN+  V F    +  
Sbjct: 1276 IRTDIFIKVAEACGLVIDIDKWVLRQACLDGARWSRKLKRPFKISVNISAVHFRQPDFID 1335

Query: 508  WIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVSTH 567
             +R  L +    +   L+ E +E  L+  L   R  +R+L  +G ++ +   G    S  
Sbjct: 1336 HLRRTLEETCIPVEN-LALEITEGVLMKELHIARDHLRLLREMGVQVAIDDFGTGYSSLA 1394

Query: 568  YIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTLQM 627
            Y++   VN LK+ RS +  I     +Q  V S++ +    + +VVA GVET ++   +  
Sbjct: 1395 YLRHFDVNLLKIDRSFLIDIADNQADQAIVSSIIELARNLKLKVVAEGVETREQLNQVLS 1454

Query: 628  LGVSGVQGRLF 638
             G   +QG  F
Sbjct: 1455 RGCHVIQGYYF 1465