Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., RNase E specificity factor CsrD from Rahnella sp. WP5

 Score =  365 bits (937), Expect = e-105
 Identities = 214/642 (33%), Positives = 348/642 (54%), Gaps = 14/642 (2%)

Query: 10  LKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAAY 69
           ++ +TRL A +TM V  AM ++ LG T SF  L ++    +LQ +    D+ +     A 
Sbjct: 1   MRFTTRLSALMTMLVALAMLLMLLGVTFSFIYLNKQDTEQHLQALATTYDQALLTHPPA- 59

Query: 70  SMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEA-----SRLHQVALPLKRNPGY 124
             QRWMP+ ++   + ++++  +   ++ + +  +   +            +PL  N   
Sbjct: 60  DAQRWMPQAMRMLDVTDIEVKLDNTTVFEYHERPDVHRSWDSVMPEYDTAIIPLMHNHAM 119

Query: 125 VMHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILA 184
            +H   V P  +Y  SL++ ++  +A+L+++  L+   +WL+++  G E LE+R   IL 
Sbjct: 120 SLHISYVDPVSSYIRSLRSTFTIGIAILVMLAMLLLSFRWLRQETDGVEKLEDRAVRILR 179

Query: 185 GRVEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVL 244
           G  E    G   EWP +AS A+DRL+ +L +AR++RSR DT IR+    D  TG +NR+ 
Sbjct: 180 GEREG-LSGHVGEWPHSASSAIDRLLRDLNEAREQRSRVDTLIRAYAQQDAQTGLSNRLF 238

Query: 245 YDSKLESALLESGAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAI 304
           +D++L + L E GAHG +M+LR+ D ++ RE   +  ++E    +   LS  V R+ DA+
Sbjct: 239 FDNQLATQLEEKGAHGVLMLLRLPDFDTMRETHGQAVVEELRSAMVNLLSTFVMRHVDAL 298

Query: 305 LSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERR 364
           L+RY+   FA+ +PH+  K+   +A+Q +  +  +     +  D   +IG++ Y+ G+  
Sbjct: 299 LARYFHSDFAVLLPHRTLKEAEVMASQLVNALGVLPTSSLIDRDALMYIGISAYRFGQTP 358

Query: 365 GRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQAC 424
            +++D  E A + A  QG N+W  + K    ++ RGSVRWRTL E  L      LY++  
Sbjct: 359 DQVMDMAEQATRHAAFQGSNSWFIYDK-NVPEKGRGSVRWRTLLENTLARGGPRLYQKPA 417

Query: 425 YRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKR 484
           +      +    H E+  R+ D +Q +L A+ F   +   G     DR + S ++  L R
Sbjct: 418 FTRDNKPD----HREVQRRVFDGEQELL-AAEFIPLVVQFGLSQSFDRVMLSQIIPLLNR 472

Query: 485 SELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPII 544
               E L+ +L V     + + RW+R+ L+Q   + R  +  E +EA L  H D +RP I
Sbjct: 473 WP-DETLAFHLTVDSLLQRSFVRWLRDTLLQCERTQRNRILIELAEADLCQHTDRLRPAI 531

Query: 545 RMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVC 604
           R+L GLGC++ V QAG T+VST Y+K   V  +KLH  L++ ID+R ENQLFV+SL+  C
Sbjct: 532 RLLQGLGCRLAVSQAGLTVVSTSYLKTFPVERVKLHPGLVRDIDKRVENQLFVQSLLSAC 591

Query: 605 GGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQMLP 646
            GTQA V A GV T +EW  L   G+ G QG  F   + + P
Sbjct: 592 EGTQALVFASGVRTKEEWAVLLKSGIHGGQGDFFAGPEPVEP 633