Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (256), Expect = 3e-26
 Identities = 90/433 (20%), Positives = 182/433 (42%), Gaps = 16/433 (3%)

Query: 205 ALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVM- 263
           AL    ++LQ   ++ +R       + + D +T    R  +  KL++      +  G+M 
Sbjct: 201 ALHDKFDQLQQQTEQLNR-------EAYQDPVTLFGTRPKFTEKLDALAKPGKSRIGLMA 253

Query: 264 MLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSK 323
           M++  +L    +   +   D+++  V  C+   +Q  P+    R     FA+FIP    K
Sbjct: 254 MIKATELGHVNQSQGRAAGDDYLAGVATCIRKALQGMPNIEAFRISSADFAVFIPDLVLK 313

Query: 324 DIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQLQGV 383
           D  Q   +     +       L  ++  +IG+  Y++G     ++   + A+  AQ  G 
Sbjct: 314 DAQQPLEKLKAQFDEYQQGSDL--ESVAYIGMVPYEQGGDALSLVYIADAAVSIAQTLGP 371

Query: 384 NAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFAR 443
           N++   Q+    +E  G   W+   E +++   I  + Q    I      + ++ EL +R
Sbjct: 372 NSY-HVQEKLSDEELVGDSHWKLAIEDIIKRRAIKFHAQD---IQPCRGADNVYRELLSR 427

Query: 444 IQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSE-LVEPLSVNLHVVPFND 502
               +   L      +  E  G    LD+ +  S +  L  +      L +N+     N 
Sbjct: 428 FYSSEGKFLPTGTVIAMAERHGLSVELDKIIILSTLRLLLDTPTFTGALGINISTASVNQ 487

Query: 503 KRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRT 562
             +  W+++  ++    + + L  E +EA +  ++      +R +  +G ++ V   G  
Sbjct: 488 PAFTAWLKDIFVRQR-QIASRLVLEVNEAGMQANIRQAHKFVRDMHSVGARVAVEHFGMG 546

Query: 563 IVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEW 622
             S  + K+++ +++KL  S  + ID    N+ FV+ +V V      +V+A  +E  +E 
Sbjct: 547 FTSFKFFKEVRPDFIKLDGSYSQGIDTDSNNRFFVKMIVDVARKQSVKVIASSIERQEEK 606

Query: 623 QTLQMLGVSGVQG 635
             L+ L V G+QG
Sbjct: 607 FALEQLLVDGLQG 619