Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., regulatory protein CsrD (RefSeq) from Shewanella loihica PV-4

 Score =  281 bits (719), Expect = 7e-80
 Identities = 186/642 (28%), Positives = 337/642 (52%), Gaps = 24/642 (3%)

Query: 9   TLKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAA 68
           T  L+ +L  F  +++ +  FI  L   +SF +L  ++    +  + E++ +     +  
Sbjct: 4   TQLLTKKLTGFWLLSLAAVAFIFLLTALVSFIQLTYKFQQQQMTELEEMLLQHQVRHELQ 63

Query: 69  YSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPGYVMHF 128
           + +  W+P++L A    +  L      +YRF    +        +V   L        H 
Sbjct: 64  H-LDIWLPQILAAYDAQKFTLIRGDETLYRFDRGNHDQSVVNYDRV---LNETLDLHFHI 119

Query: 129 KAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRVE 188
               P+L +N S        +  + +   + RG  WL  QL G E L +R  +IL+G  +
Sbjct: 120 SLPQPFLLHNISWHGGLVFLVGCIAVGLLVRRGYLWLALQLQGIEDLAKRSHLILSGDYD 179

Query: 189 QHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSK 248
           +         P   + AL +++ EL DA+++R+RFD FIRS TFLD  +G  NR+   ++
Sbjct: 180 KALAETGHGRPRLINRALTQMLLELDDAQKQRARFDQFIRSNTFLDPESGIGNRLFLKNR 239

Query: 249 LESALLESG--AHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILS 306
           L++   + G  A G +++L ++DL+  ++E+ + ++ E + +    +S+++    ++I S
Sbjct: 240 LDALSNKDGMMAPGVLLLLEMEDLDLLQQEADEFSIQELLTQTIGGISHLLDSQANSIFS 299

Query: 307 RYYEDVFALFIPHQGSKDIAQVATQAIKL-----IERINPPEPLPEDNWFHIGVTMYQEG 361
           R   + FA+ +P     D  ++A + +K+     +E +N       D++FHIGV  ++ G
Sbjct: 300 RRSYNQFAIVVPQISLADAEKLAARLLKVCLSQPLEGVNN-----RDDFFHIGVAYFKVG 354

Query: 362 ERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQE-DRGSVRWRTLFEQVLRPEEILLY 420
           E + ++I+E E AL++AQ QG + W  + K    +E  RGSVRWR+  E  L  + ++ +
Sbjct: 355 ESKEQLIEEAEMALRAAQFQGNSGWFMYDKGAVDEEFARGSVRWRSFLEYALVNKRVVPF 414

Query: 421 RQACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVS 480
            QA   + ++G+    H E+  R++D    +++A+ F       G    ++R V  +V+ 
Sbjct: 415 TQAI--LDSDGKEH--HSEVSCRLRDSSDNLVRATLFLPMAIKCGLIPQIERQVIEAVLF 470

Query: 481 FL--KRSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLD 538
            L  K  +     S+NL +     + + RW++  L++    L   L FE +E  LVN+L 
Sbjct: 471 DLLPKSPKDQRKYSINLSLDTLTSRAFIRWLQTTLLEYRH-LTPRLIFEINEDILVNNLA 529

Query: 539 YMRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVR 598
            ++  + M+A +G  + V + G+ +VST Y++  +V+ +KLHRS++++I  R ENQLFVR
Sbjct: 530 KLKAPLDMIAKMGASLCVDRVGQQVVSTQYLQSCRVDLIKLHRSIVRQIHLRQENQLFVR 589

Query: 599 SLVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDE 640
           SL+G    T+ +V A GVE+ +EWQTL++LGVS  QG  F +
Sbjct: 590 SLIGGLYRTEVQVFAEGVESLEEWQTLKILGVSAGQGSFFSD 631