Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score = 98.6 bits (244), Expect = 8e-25
 Identities = 107/514 (20%), Positives = 210/514 (40%), Gaps = 34/514 (6%)

Query: 139 YSLQAMWST-TLAVLLI-VFFLIR------GLKWLKEQLLGSELLEERGRMILAGRVEQH 190
           +    +W T T A+++I + FL+       GL W+   L   E+ E       A  + Q 
Sbjct: 140 FGYNELWRTLTNAIIVISILFLLAIMLARFGLTWILRPL--HEIAEH------AAEIAQR 191

Query: 191 AKGDPREWPFTAS-----EALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLY 245
             G     P T+      EA + +  +L+          T +R +  +DQ++   NR   
Sbjct: 192 KFGPDMAIPKTSELKSVVEAFNSMSHQLKQIFSSLDEEVTELRKKNLVDQVSKLPNRQYM 251

Query: 246 DSKLESALLESGAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAIL 305
             +L S L E   +G +MM + D LE    +   +  DE I  + E +   +     +++
Sbjct: 252 MGRLNSWLSEPN-NGSLMMAKFDWLEEVHSKYGYQVRDETIRLLSEKMQEQLDEIAPSVI 310

Query: 306 SRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRG 365
           +R     FA  I     +  ++     I+ + +         +  F IG+    +     
Sbjct: 311 ARIAAYEFAFLITSAEQEQSSKYLHTLIRTVNQEISKAGCKPNEQFAIGIAQRTDNMTVS 370

Query: 366 RIIDEMETALKSAQLQG-VNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQAC 424
            I+ + + AL+ A     V  W    + KQL       +WR      +  ++     Q  
Sbjct: 371 DILAQTDNALQKAIADNKVFHWFESNE-KQLYTRE---QWREHLSAAISSKQFQFKWQPV 426

Query: 425 YRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKR 484
           Y  + +   E +  EL+ ++    + I  A +F   +E +   +MLDR +  ++V     
Sbjct: 427 YHTNKD---EVVQRELYCQLTIGDKEI-HAGQFMPYVELLSLGSMLDRCLIETIVDNGLL 482

Query: 485 SELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPII 544
               EP+++NL     +D  + +W+   L   P + R  + F+  EA + +  D  + + 
Sbjct: 483 ERNYEPIAINLTFNSLSDTTFHQWLNKFLRNTPLAQR--IVFDIPEAGVYSDPDACQALC 540

Query: 545 RMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVC 604
            ++   G    +   GR   S  Y+++L+ +Y+KL +S     +  H ++L  R+LV V 
Sbjct: 541 NIIRDNGAHFGIDHFGRQFGSMSYLQNLRPSYVKLDQSFAYYDENEHNSEL-CRALVNVA 599

Query: 605 GGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLF 638
            G   +++  G++   +    + L  +   G ++
Sbjct: 600 RGLDIQIIVTGIQEQPQLARFEPLKANAYMGYIY 633