Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 94.7 bits (234), Expect = 2e-23
 Identities = 108/458 (23%), Positives = 188/458 (41%), Gaps = 23/458 (5%)

Query: 201  TASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHG 260
            T S AL   I    D   ER   +  I      D LTG  NR   +++LE +L ++  HG
Sbjct: 822  TQSGALTHYITLFSDIT-ERKETEARIHHLAHHDPLTGLPNRFTLEARLEQSLADARRHG 880

Query: 261  ---GVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFI 317
                VM + +D  ++  +       D  ++E+   L + V R  D + +R   D F + +
Sbjct: 881  HKVAVMFMDLDRFKTINDSLGHAVGDSLLMEIAHRLRSAV-RESDTV-ARLGGDEFVVVL 938

Query: 318  PH-QGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMY-QEGERRGRIIDEMETAL 375
            P  +G+ D A VA + I+ + R              IG+++Y  +GE    ++   +TA+
Sbjct: 939  PDVEGANDAAHVAGKIIEDVARSLRVGAHELHTSASIGISLYPDDGETVPTVMQNADTAM 998

Query: 376  KSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREF 435
              A+  G N +  F               R L  Q +  +E+ L+ Q  + ++A+     
Sbjct: 999  YHAKAIGRNNFQFFASAMNRAATERLELERKL-RQAMVNDELELHFQPQFALAAD---RV 1054

Query: 436  LHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKR--SELVEPL-- 491
               E   R + P+ G++   RF    E  G    +   V  +    LK    + + PL  
Sbjct: 1055 TGVEALLRWRHPEDGLIPPDRFIPIAEETGLIVGIGDWVLQAACRQLKAWLDQGLPPLRM 1114

Query: 492  SVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLG 551
            +VNL      +K +   +   L +        L  E +E+ ++   +     ++ L  +G
Sbjct: 1115 AVNLSTRQLKEKEFPSRVAAILQETGLPA-VLLELEITESGVMERPEEAITTLQALNDMG 1173

Query: 552  CKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEV 611
              + +   G    S  Y+K   ++ LK+ RS ++ I++  ++    R  + +      EV
Sbjct: 1174 VTLAIDDFGTGYSSLSYLKLFPIDRLKIDRSFVRDIERDPDDAAIARGTIALAHSLGLEV 1233

Query: 612  VAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQMLPPLP 649
            VA GVET+ +   L   G   VQG  F        PLP
Sbjct: 1234 VAEGVETSAQLDMLAADGCDEVQGYFFSR------PLP 1265