Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 972 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 94.7 bits (234), Expect = 2e-23
 Identities = 110/448 (24%), Positives = 193/448 (43%), Gaps = 30/448 (6%)

Query: 219 ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLE---SGAHGGVMMLRVDDLESARE 275
           +R + +  I    + D LTG  NR L+  +LE+AL +   S     V++L +D  ++  +
Sbjct: 526 DRKQAEAHIHHLAYHDPLTGLPNRRLFYDRLENALRQAHRSRRKLAVLLLDLDRFKAVND 585

Query: 276 ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKL 335
                  D  + EVG  LS +  R  D  L+R   D F L +P   S + A +   A KL
Sbjct: 586 TLGHDQGDLLLKEVGARLS-LCLREGDT-LARLGGDEFVLLLPEVLSAEDASIV--AGKL 641

Query: 336 IERINPPEPLPEDNWF---HIGVTMYQ-EGERRGRIIDEMETALKSAQLQGVNAWSRFQK 391
           + + + P  L E   F    IG+ +Y  +GE    ++   + A+ +A+  G  A  RF  
Sbjct: 642 LAQFDQPVRLGEREIFASTSIGIALYPADGEDGESLLKHADVAMYAAK-DGGRAAYRFFI 700

Query: 392 PKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGI 451
               +     +       + +  E++LLY Q   +I A+  R     E   R + P +G+
Sbjct: 701 ASHNERSLERLELENDLRRAVEGEQLLLYYQP--QIGASSGR-IAGVEALVRWRHPTRGL 757

Query: 452 LKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVVPFN--DKRYARW- 508
           +    F +  E  G   ++D      +V+  ++    +   V +  V  N   ++  RW 
Sbjct: 758 VMPDSFIALAENAG---LIDAIGHWCLVAACRQLRAWQEQGVPVPRVAVNVSARQLRRWD 814

Query: 509 IRNELMQMPFSLR---TALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVS 565
              E++Q+          L  E +E+ L +  + +  I   L   G ++ +   G    S
Sbjct: 815 FAQEVLQVVTQSGIDPAGLELELTESSLADDPEQILAIFSTLRQAGVRVSIDDFGTGYSS 874

Query: 566 THYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTL 625
             Y+    V+ +K+ RS + ++    E +  VR+++ +  G     VA GVET  +WQ L
Sbjct: 875 LSYLSRYPVDEVKIDRSFVSRLLDDREARSVVRAVILLAHGLGMRTVAEGVETEAQWQVL 934

Query: 626 QMLGVSGVQGRLFDEEQQMLPPLPPEPL 653
             L    +QG LF +      P+PP  +
Sbjct: 935 SDLDCDELQGYLFSK------PVPPHQI 956