Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1162 a.a., sensory box/FOG: EAL domain/GGDEF domain containing protein from Marinobacter adhaerens HP15

 Score =  100 bits (248), Expect = 5e-25
 Identities = 93/433 (21%), Positives = 190/433 (43%), Gaps = 25/433 (5%)

Query: 219  ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHG---GVMMLRVDDLESARE 275
            E+   D  +  Q   D LTG ANR L++ +L+     +  H     V+ + +D+ +   +
Sbjct: 717  EKKEQDEEMAYQATHDLLTGLANRSLFNDRLKHDFELAKRHSQSMAVLFIDLDEFKPIND 776

Query: 276  ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKL 335
                R  D+ ++ V E L+++++  P   L+R+  D F L +P      +A+   +  ++
Sbjct: 777  TLGHRVGDKLLVSVAERLNSLIR--PSDTLARFGGDEFVLLLPDLEETGLAEEIAE--RI 832

Query: 336  IERINPPEPLPEDNWFHI----GVTMYQEGER-RGRIIDEMETALKSAQLQGVNAWSRFQ 390
            ++ +  P  + ++N  HI    G+       R   +++   + A+  A+ QG + +  + 
Sbjct: 833  LQELAKPHQI-DNNELHISASIGIATNSHSSRFPEKLLQRADMAMYKAKQQGRDTYEIYS 891

Query: 391  KPKQLQEDRGS-VRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQ 449
                L E   + V  R   ++ ++ +++ L+    Y+   N +   +  E   R Q PQ+
Sbjct: 892  A--DLDEALSTRVTLRNDLQEAIKGDQLRLH----YQPLVNADGSIVSLEALVRWQHPQK 945

Query: 450  GILKASRFSSALETVGYEAMLD----RAVFSSVVSFLKRSELVEPLSVNLHVVPFNDKRY 505
            G +  + F    E  G    L     R      +  ++R   +  ++VNL  + F+   +
Sbjct: 946  GSISPADFIPIAEETGQIVPLGKWVTRKACEDALILIERGLRMGCMAVNLSPMQFHRPNF 1005

Query: 506  ARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVS 565
               +R  L +        L  E +E  L+      + I+  L G+G K  +   G    S
Sbjct: 1006 LNVLRQILEETGLPPEY-LELELTEGILMKDTGGAKNILNDLRGMGVKTAIDDFGTGFSS 1064

Query: 566  THYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTL 625
              Y+++L V+ +K+ RS ++ +    ++    + ++ +       VVA GVET ++++ L
Sbjct: 1065 FGYLRELPVDKIKIDRSFVEDVTSCEKDAAVCKGVITLARELGMRVVAEGVETEEQYRYL 1124

Query: 626  QMLGVSGVQGRLF 638
               G +G QG  F
Sbjct: 1125 AKHGCTGFQGYYF 1137