Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 755 a.a., sensory box/GGDEF family protein from Marinobacter adhaerens HP15

 Score = 99.4 bits (246), Expect = 6e-25
 Identities = 105/455 (23%), Positives = 200/455 (43%), Gaps = 34/455 (7%)

Query: 219 ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGA---HGGVMMLRVDDLESARE 275
           +R + ++ I    F D LTG  NR L   +L  AL  S     HG ++ + +D+ ++  +
Sbjct: 303 DRKQSESEIEKLAFYDPLTGLPNRRLLRDRLAQALTGSNRDHNHGALVFIDLDNFKNIND 362

Query: 276 ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFI---PHQGSKDIAQVATQA 332
            +   T DE +++VGE L N V+ +    ++R   D F L +   P + +   A+V    
Sbjct: 363 SAGHLTGDELLVQVGERLKNTVRDWDT--VARLGGDEFVLILKGFPAEPADAAAKVEKVC 420

Query: 333 IKLIERINPPEPLPEDNWF---HIGVTMYQEGERR-GRIIDEMETALKSAQLQGVNAWSR 388
            K+ + +N P  L    +     IG+T++ + +     ++ + + A+  A+  G N   R
Sbjct: 421 EKIRDALNEPYDLNGIEYTGTPSIGITLFYDHDTSLEELLSQADMAMFRAKEDGRNC-IR 479

Query: 389 FQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQ 448
           F      ++    +   +     LR  ++ ++    Y++  N + E +  E   R   P 
Sbjct: 480 FYDCMMQKKVSERLALESDLRVALRKNQLAVH----YQVLVNEKGEPVGAEALLRWHCPG 535

Query: 449 QGILKASRF------SSALETVGYEAMLDRAVFSSVVSFLKRSELVEPL--SVNLHVVPF 500
           +G++  + F      +  +E+VGY  + D  V S + S+ +R   +  L  SVN+    F
Sbjct: 536 RGMVSPAEFIPLAEETGLIESVGYWVLED--VLSRIASWKERGGPLSKLQVSVNVSARQF 593

Query: 501 NDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAG 560
           +   +   +   L +   S R  L  E +E+ L   L+ +   +R L  +G +I +   G
Sbjct: 594 HLPSFCSTVMALLRKTGASPRN-LKVEITESALAYDLELVEETLRTLRSMGIRISLDDFG 652

Query: 561 RTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQ 620
               S  Y+K L ++ LK+ +  ++ I     +     +++ +    +   VA GVET  
Sbjct: 653 TGYSSLGYLKRLSLDELKIDQGFVRDILDDPNDAAIAETILALASALKLSAVAEGVETKG 712

Query: 621 EWQTLQMLGVSGVQGRLFDEEQQMLPPLPPEPLKR 655
           + + L  +G +  QG  F        PLP    +R
Sbjct: 713 QLERLVRMGCTRFQGYHFSR------PLPALEFER 741