Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., diguanylate cyclase/phosphodiesterase from Marinobacter adhaerens HP15

 Score =  129 bits (323), Expect = 6e-34
 Identities = 103/435 (23%), Positives = 195/435 (44%), Gaps = 10/435 (2%)

Query: 203 SEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKL--ESALLESGAHG 260
           ++A++R+ ++L    + +++    +R     D +TG A+R  +D +L  E    E  A G
Sbjct: 224 TDAMNRMADDLGQLFEGQAKLIQHLRRVNNEDSVTGLASRSAFDQRLKVEVESEEKAAPG 283

Query: 261 GVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQ 320
            +M++++ D     +   +   D  ++ V   +   V ++  +   R     FA+F+P  
Sbjct: 284 ILMLIQLADFSGYNQAYGRSEADRLLLRVATWIGEFVMQHAGSFAGRRTGAEFAIFLPGA 343

Query: 321 GSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQL 380
              D      Q +  ++ +      P D   H G+    EG     ++   + AL++AQ 
Sbjct: 344 MPADAGVWCRQLVTDLDGVYADLASPMDTSVHAGLARTLEGRGARDLMAAADEALRAAQS 403

Query: 381 QGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYEL 440
           +  +        K    +  +  WR +  Q +R + + L+ Q        G    +++++
Sbjct: 404 RAESGCHLADPEKDGHHNLET--WRVIISQAIRRQALSLWLQPMVN---EGRLMPVYHQV 458

Query: 441 FARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVVPF 500
           F+RI D  +G LKA  F    E  G  + LDR +   V+  LK+S   +PL+V+L     
Sbjct: 459 FSRI-DSAEGALKAGTFVPMAERFGLISELDRLLVQRVLDRLKQSP-DQPLAVSLGNASV 516

Query: 501 NDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAG 560
             + +   + ++L Q     R  L    SE  + +H   +  ++R L  LG  ++V + G
Sbjct: 517 ASEAFRTDLLDQLRQAGSPARN-LWIGISEQAIHHHRTAVGLLVRALGRLGVPVLVDRFG 575

Query: 561 RTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQ 620
              V   Y+++L+   L++  S I  ID   +N+ ++ S+V +      +V A GVET  
Sbjct: 576 VGGVPFSYLRNLRFQALRIDNSFIHNIDTHEDNRFYLESVVAIAHSRGVKVFATGVETAA 635

Query: 621 EWQTLQMLGVSGVQG 635
           E+  L  LG+ G  G
Sbjct: 636 EYSVLCKLGIDGAMG 650