Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., MSHA biogenesis protein MshH (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  300 bits (768), Expect = 1e-85
 Identities = 190/643 (29%), Positives = 338/643 (52%), Gaps = 24/643 (3%)

Query: 12  LSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEV-VDKEMEDPDAAYS 70
           L+T+L +F  M++ +  F+  L   +SF +L  ++    +  +  + ++     PD  + 
Sbjct: 2   LTTKLTSFWLMSLAAIAFVFLLCAMMSFVQLTYKFQQQKVAELETLLIEHYHTQPD--WE 59

Query: 71  MQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPGYVMHFKA 130
           ++ W+P ML A   +E +LT ++  ++ ++    T        +  P     G  M    
Sbjct: 60  LESWLPPMLLAFNAVEFRLTMKSEVLFAYQGNVQTQNPMVYTHLLDP---QSGLSMTLSL 116

Query: 131 VPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRVEQH 190
             P+ +Y+ S   +    + +L ++  +  G  WL +QL G E L +R R+IL G+ EQ 
Sbjct: 117 PQPFDHYSISWYELLILGVGLLAVIALVRFGHIWLSQQLDGIEELAQRSRLILQGKHEQA 176

Query: 191 AKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLE 250
                   P   + AL +L+EELQDA +ER RFD FIRS TFLD  T   NR+  +++L+
Sbjct: 177 LATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRLD 236

Query: 251 SALLESG--AHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRY 308
           +   + G  AHG + +L +DDL+  ++   +  + + +      +++I+Q  P++I +R 
Sbjct: 237 ALSHDQGMVAHGVIYLLEMDDLDFIQQAKGEGAVKDLLHATVNGINSILQSLPNSIFARR 296

Query: 309 YEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPE-----DNWFHIGVTMYQEGER 363
             + FA+ +PH    +  Q+A++ +K+       +PLP+     DN++H+G   +  G+ 
Sbjct: 297 THNQFAIVVPHVSLIEADQLASKLLKVCLS----QPLPDGVDNRDNFYHLGCAYFTAGDN 352

Query: 364 RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQE-DRGSVRWRTLFEQVLRPEEILLYRQ 422
             +++DE + AL++AQLQG + W  + K    +E  +GSVRWR+  E  L       + Q
Sbjct: 353 VNQLLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQ 412

Query: 423 ACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFL 482
               + ++G     H E+F R +D Q  +++A+ F       G    ++R +   V+  L
Sbjct: 413 PI--MDSDGVEH--HKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLVLL 468

Query: 483 KRSELV-EPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMR 541
            + +   +  SVNL +     + +  W++  L++    L   L FE SE  +V H D ++
Sbjct: 469 GQEQHKGQVYSVNLSLDTLMSRAFTHWLKTTLLEYRH-LTPQLIFEVSEDIVVQHQDKLQ 527

Query: 542 PIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLV 601
           P + M++ +G ++ V   G+ +V T+YI++   + +KLHRS+++ I  R ENQLF+RSL+
Sbjct: 528 PKLDMISKMGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHIHLRPENQLFIRSLI 587

Query: 602 GVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQM 644
           G    T+  V A GVE  +EWQTLQ+LGV   QG  F +  ++
Sbjct: 588 GGLYRTEVLVSAEGVEVFEEWQTLQILGVGMAQGMYFSDPVEL 630