Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (327), Expect = 2e-34
 Identities = 99/440 (22%), Positives = 197/440 (44%), Gaps = 9/440 (2%)

Query: 205 ALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVM- 263
           AL+    +L+      +  +  +    + D +TG  +R  + +KLES    +    G+M 
Sbjct: 194 ALEECRAQLKSQMDSLTNENQKLHKVAYQDPITGFGSRPRFTTKLESISNHAVPQLGLMA 253

Query: 264 MLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSK 323
           M++  +L    +   +   D+++  +  C+     +YPDA   R     FA+F+P    K
Sbjct: 254 MVKATELAHINQLQGRSAGDDYLSNLATCIRKASSKYPDAECYRVSSADFAIFLPDLVLK 313

Query: 324 DIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQLQGV 383
           D  +   Q   L++     + +  ++  H+G+  YQ+G     ++   +TA+  AQ  G 
Sbjct: 314 DGPKFLDQLKILLDEYQ--QMIKTESAAHVGLVPYQQGADPVNLLSLADTAVSIAQTLGP 371

Query: 384 NAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFAR 443
           N++   Q+     E  G  RW+     ++  + +  ++Q       + E   ++ EL AR
Sbjct: 372 NSY-HIQEKLNGDEQFGDDRWKLAINDLITRQALKFFQQPIQPCRNDVE---VYRELLAR 427

Query: 444 IQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEP-LSVNLHVVPFND 502
             + +   L  +   +  E  G    LD+ V  S +  LK +  +     +N+     + 
Sbjct: 428 FYNSEGKFLPTTTVIAMAERHGMSTELDKLVVISTLKMLKENPTISGNFGINISAFSAHQ 487

Query: 503 KRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRT 562
           + +  W+R+ L +  + + + L FE +E+ +  +L      +R +  +G ++ + + G +
Sbjct: 488 ELFVGWLRDILGKHRY-IASRLVFEINESGMQANLGASYKFVREVHSVGSRVSIERFGMS 546

Query: 563 IVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEW 622
             S  +  +++ +Y+KL  S    ID+   N+ FVR +V V       V+A  VE  +E 
Sbjct: 547 FTSFKFFSEVRPDYIKLDGSYTASIDEDSNNKFFVRMMVDVARRIGIRVIATSVERQEEK 606

Query: 623 QTLQMLGVSGVQGRLFDEEQ 642
            TL+ L V G+QG    + Q
Sbjct: 607 LTLEKLLVDGLQGYYISQPQ 626