Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., RNase E specificity factor CsrD from Klebsiella michiganensis M5al

 Score =  333 bits (855), Expect = 1e-95
 Identities = 212/662 (32%), Positives = 344/662 (51%), Gaps = 26/662 (3%)

Query: 10  LKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEVVDKEMEDPDAAY 69
           ++L+T+  AFVT+     +F+  +G +LSF    Q  + + +Q +  ++D  +     + 
Sbjct: 1   MRLTTKFSAFVTLLTGLTIFVTLIGASLSFYNGIQLKMTNRVQAVATMLDNRL----VSM 56

Query: 70  SMQRWMPKMLQASGIIE-----MQLTSEAGPIYRFKDTTNTIEASR-LHQVALPLKRNPG 123
           S  +  P+M +    +E      QL  ++   +   D    + +S+    + +P  ++PG
Sbjct: 57  SFDQIEPQMDELMTPVEAVRVDFQLNGKSVYSHSRTDNYRPLGSSKQFRAITVPSLKHPG 116

Query: 124 YVMHFKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMIL 183
             +H   + P  NY  SL      ++A+  +V  +   ++W++ QL G ELLE R   IL
Sbjct: 117 MAIHLVYLDPMANYFRSLHVTAPLSIAIGFMVLIIFFSVRWIRRQLAGQELLELRTARIL 176

Query: 184 AGRVEQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRV 243
            G      +G   EWP   S ALD L+ ELQ A  +RSR DT IRS    D  TG +NR+
Sbjct: 177 NGERGPQVRGSVHEWPANTSSALDMLLSELQFASDQRSRMDTLIRSYVAQDSKTGLSNRL 236

Query: 244 LYDSKLESALLES----GAHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQR 299
            +D++L S LLE     G++G VMM+R+ D +  R+   +   +E    +   LS  + R
Sbjct: 237 FFDNQL-STLLEDQEKVGSYGIVMMIRLPDFDLLRDNWGRAATEEHYFTLINMLSTFIMR 295

Query: 300 YPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQ 359
           YP A+L+RY+   FA+ +PH+  K+   +A   +K ++ + P   L  D+  HIG+  ++
Sbjct: 296 YPGALLARYHRSDFAVLLPHRTLKEADSIAGLLLKAMDALPPTRILDRDDMMHIGICAFR 355

Query: 360 EGERRGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILL 419
            G+   ++++  E A ++A LQG N+W+ +      ++ RG+VRWRTL EQ+L      L
Sbjct: 356 SGQTAAQVMEHAEAATRNAVLQGSNSWAVYDDSLP-EKGRGNVRWRTLIEQMLSRGGPRL 414

Query: 420 YRQACYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVV 479
           Y++    ++ +G     H EL  R+ D ++ ++ A      L+  G     DR   + ++
Sbjct: 415 YQKPA--VTRDGRVH--HRELMCRLYDGKEEVIAAEYMPMVLQ-FGLAEEYDRLQITRLL 469

Query: 480 SFLKRSELVEPLSVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDY 539
            FL      E L++ + V      R+ RW+R+ LMQ   S R  + FE +EA +  ++  
Sbjct: 470 PFLGFWP-EENLALQVTVESLIRPRFQRWLRDTLMQCEKSHRRRIIFELAEADVCQYIGR 528

Query: 540 MRPIIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRS 599
           ++P++R++  LG +I V QAG T+V T +IK L V  +KLH  L + I++R ENQL V+S
Sbjct: 529 LQPVMRLVNALGIRIAVVQAGLTLVGTSWIKQLDVEVIKLHSGLSRNIEKRSENQLLVQS 588

Query: 600 LVGVCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDEEQQMLPPLPPEPLKRPPRL 659
           LV  C G   +V A GV +  EWQ L   GV+G QG  F   Q    PL     K   R 
Sbjct: 589 LVEACKGMPVQVFATGVLSRSEWQVLSQCGVTGGQGEFFAASQ----PLDTNVKKYSQRY 644

Query: 660 SV 661
           SV
Sbjct: 645 SV 646