Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., regulatory protein CsrD (RefSeq) from Shewanella sp. ANA-3

 Score =  309 bits (792), Expect = 2e-88
 Identities = 189/638 (29%), Positives = 338/638 (52%), Gaps = 16/638 (2%)

Query: 9   TLKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVEV-VDKEMEDPDA 67
           T  L+T+L +F  M++ +  F+  L   +SF +L  ++    +  +  + ++     PD 
Sbjct: 4   TRMLTTKLTSFWLMSLAAIAFVFLLSAMMSFVQLTYKFQQQKVTELESLLIEHYQTQPD- 62

Query: 68  AYSMQRWMPKMLQASGIIEMQLTSEAGPIYRFKDTTNTIEASRLHQVALPLKRNPGYVMH 127
            + ++ W+P ML A   +E +LT ++  ++ ++    T  A     +  P     G  M 
Sbjct: 63  -WELESWLPPMLLAYNAVEFRLTMKSEVLFAYQGNVQTQNAMVYTHLLDP---QSGLNMT 118

Query: 128 FKAVPPYLNYNYSLQAMWSTTLAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRV 187
                P+ +Y+ S   +    + +L ++  +  G  W  +QL G E L +R R+IL G+ 
Sbjct: 119 LTLPQPFEHYSVSWYELLILGVGLLAVIALVRFGHVWFSQQLDGIEELAQRSRLILQGKH 178

Query: 188 EQHAKGDPREWPFTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDS 247
           EQ         P   + AL +L+EELQDA +ER RFD FIRS TFLD  T   NR+  ++
Sbjct: 179 EQALATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNN 238

Query: 248 KLESALLESG--AHGGVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAIL 305
           +L++   + G  AHG + +L +DDL+  ++   +  + E +      +++I+Q  P++I 
Sbjct: 239 RLDALSHDQGMVAHGVIYLLEMDDLDLLQQAKGESAVKELLHATVNSINSILQTLPNSIF 298

Query: 306 SRYYEDVFALFIPHQGSKDIAQVATQAIKL-IERINPPEPLPEDNWFHIGVTMYQEGERR 364
           +R   + FA+ +PH    +  Q+A++ +K+ + +  P +   +DN++H+G   +  G+  
Sbjct: 299 ARRSHNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDDVENQDNFYHLGCAYFTAGDNV 358

Query: 365 GRIIDEMETALKSAQLQGVNAWSRFQKPKQLQE-DRGSVRWRTLFEQVLRPEEILLYRQA 423
            +++DE + AL++AQLQG + W  + K    +E  +GSVRWR+  E  L       + Q 
Sbjct: 359 NQLLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQP 418

Query: 424 CYRISANGEREFLHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLK 483
              + ++G     H E+F R +D Q  +++A+ F       G    ++R +   V+  L 
Sbjct: 419 V--MDSDGVEH--HKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLGLLS 474

Query: 484 RSELVEPL-SVNLHVVPFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRP 542
           + +    + SVNL +     + + +W++  L++    L   L FE SE  ++ H D ++P
Sbjct: 475 QEKHKNQVYSVNLSLDTLMSRAFTQWLKTTLLEYRH-LTPQLIFEVSEDIVILHQDKLKP 533

Query: 543 IIRMLAGLGCKIVVGQAGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVG 602
            + M+  +G ++ V   G+ +V T+YI++   + +KLHRS+++ I  R ENQLF+RSL+G
Sbjct: 534 KLDMIRKMGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHIHLRPENQLFIRSLIG 593

Query: 603 VCGGTQAEVVAVGVETTQEWQTLQMLGVSGVQGRLFDE 640
               T+ +V A G+E  +EWQTLQ+LGV   QG  F E
Sbjct: 594 GLYRTEVQVCAEGIEVFEEWQTLQILGVGMAQGMYFSE 631