Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella sp. ANA-3

 Score =  130 bits (327), Expect = 2e-34
 Identities = 111/498 (22%), Positives = 215/498 (43%), Gaps = 16/498 (3%)

Query: 148 TLAVLLIVFFLIRGLKWLKEQL-LGSELLEERGRMILAGRVEQHAKGDPREWPFTASEAL 206
           T  +L++VF L+  +  LK  +   +E +     M  +        G+         +  
Sbjct: 142 TYILLMVVFILL--INRLKSAIRYAAEYISHIPDMNFSAIESSKLNGEMAPVKLALEDCR 199

Query: 207 DRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHGGVM-ML 265
            +L  +L    QE  +    +    + D +TG  +R  + +KLES    S    G++ M+
Sbjct: 200 TQLKSKLDLLTQENQK----LHKAAYQDPVTGFGSRPPFTTKLESISNRSIPQLGLLAMV 255

Query: 266 RVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDI 325
           +  +L    +   +   D+++  V  C+     +YPD+   R     FA+F+P    KD 
Sbjct: 256 KATELSHVNQLQGRSAGDDYLASVANCIRKACSKYPDSECYRVSSADFAIFLPDLVLKDG 315

Query: 326 AQVATQAIKLIERINPPEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQLQGVNA 385
            +   Q    ++     +    ++  HIG+  YQ+G     ++   +TA+  AQ  G N+
Sbjct: 316 PKFLEQLKVFLDEYQ--QMTRAESVAHIGLVPYQQGTDPVNLLSLADTAVSIAQTLGPNS 373

Query: 386 WSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQ 445
           +   Q+     E  G  RW+     ++  + +  ++Q       + E   ++ EL AR  
Sbjct: 374 F-HIQEKLNGDEQFGDDRWKVAINDLITRQALKFFQQPIQPCRNDVE---VYRELLARFY 429

Query: 446 DPQQGILKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEP-LSVNLHVVPFNDKR 504
           + +   L  +   +  E  G    LD+ V  S +  LK +  +     VN+     + + 
Sbjct: 430 NNEGKFLPTTTVIAMAERHGMSTELDKLVVISTLRMLKENPTISGNFGVNISAFSAHQEL 489

Query: 505 YARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIV 564
           +  W+R+ L +  + + + L FE +E+ +  +L      +R +  +G ++ + + G +  
Sbjct: 490 FVGWLRDVLSKHKY-IASRLVFEINESGMQANLGASYKFVREVHSVGSRVSIERFGMSFT 548

Query: 565 STHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQT 624
           S  +  +++ +Y+KL  S    ID+   N+ FVR +V V       V+A  VE  +E  T
Sbjct: 549 SFKFFSEVRPDYIKLDGSYTSSIDEDSNNKFFVRMMVDVARRIGIRVIATSVERQEEKLT 608

Query: 625 LQMLGVSGVQGRLFDEEQ 642
           L+ L V G+QG    + Q
Sbjct: 609 LEKLLVDGLQGYYIAQPQ 626