Pairwise Alignments

Query, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

Subject, 1487 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score = 95.5 bits (236), Expect = 2e-23
 Identities = 100/433 (23%), Positives = 186/433 (42%), Gaps = 23/433 (5%)

Query: 219  ERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALL---ESGAHGGVMMLRVDDLESARE 275
            ER R +  +R     D LTG  NR L+ S+L  ++    ++G    ++ L +D  +   +
Sbjct: 1044 ERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQTAQQTGEKLALLFLDLDRFKHVND 1103

Query: 276  ESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQGSKDIAQVATQAIKL 335
                   D  ++E    L + +    + +L R+  D F + +  + + ++ ++   A +L
Sbjct: 1104 SYGHSMGDALLVEASNRLQSCIGS--EHLLCRFGGDEFVILL--RNANNLNEINHIAERL 1159

Query: 336  IERINPPEPLPEDNWF---HIGVTMY-QEGERRGRIIDEMETALKSAQLQGVNAWSRFQK 391
            + +I  P  L    ++    IG++++  +  +    I   + A+  A+ +G   +  +  
Sbjct: 1160 LAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYYSS 1219

Query: 392  PKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYELFARIQDPQQGI 451
             +  Q     +R      + +  EE  LY Q    I   G++ F+  E   R + P++G 
Sbjct: 1220 ERNAQA-LYHLRLEADLRKAIEREEFELYYQPQIDI-LRGDK-FIGMEALIRWRHPKEGY 1276

Query: 452  LKASRFSSALETVGYEAMLDRAVFSSV----VSFLKRSELVEPLSVNLHVVPFNDKRYAR 507
            ++   F    E  G    +DR VF         ++KR      LSVN+  V F    +  
Sbjct: 1277 IRPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCAAPFKLSVNISAVHFRQPDFIE 1336

Query: 508  WIRNELM--QMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQAGRTIVS 565
             ++  L   QMP S   +L  E +E  L+  +   +  +  L  LG ++ +   G    S
Sbjct: 1337 GLKKILADTQMPTS---SLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSS 1393

Query: 566  THYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVETTQEWQTL 625
              Y++   VN LK+ RS +  I     +Q  V S++ +    +  VVA GVET ++ + +
Sbjct: 1394 LAYLRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQV 1453

Query: 626  QMLGVSGVQGRLF 638
               G   VQG  F
Sbjct: 1454 FSRGCYIVQGYYF 1466