Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 944 a.a., Excinuclease ABC subunit A from Pseudomonas fluorescens FW300-N2E2

 Score = 1438 bits (3722), Expect = 0.0
 Identities = 703/940 (74%), Positives = 821/940 (87%), Gaps = 2/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +DKI +RGARTHNLKNI+LT+PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   LDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H +PL+AQT+SQMVD VL  PEGSK+MLLA +V+ERKGEH+   E L AQGF+RAR++
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVVRERKGEHLMVFEELRAQGFVRARVN 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           G+ C+L + PKL+  KKH+I+V+VDRFKVR+DLQQRLAESFETAL+L+ GI +VAPM+ +
Sbjct: 181 GKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 -GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
            GEE IFSA FACP CG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ +  L
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGEL 299

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           +LA+GAIRGWD++N YYFQML +LA HY F +  PFN+L    Q+ IL GSG   ++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLAAHYKFSLDKPFNELPADQQKFILQGSGSQNVDFKY 359

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           +NDRGDI  + HPFEGI+ NLERRYR+TES SVREELAK++S +PC  C GTRL+ EAR+
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           V++ +  LP +  L I DA  +F  LKL G+R +IA+K++KEI +RLQFLVNVGL+YL L
Sbjct: 420 VWVGEKTLPAVTSLPIGDATDYFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLTL 479

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
            RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLL TL HLR++GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR+AD+V+DIGPGAGVHGG +VA+G   E++A+P+SLTG+YLSG  KI V
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHPDSLTGKYLSGRVKIKV 599

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P +RTP++ K ++ LKGA GNNL+NVDL IP+GL TCVTGVSGSGKSTLIN+T F ++ T
Sbjct: 600 PAKRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
           ALNGATT   A + SI+GLEH DKV+DIDQSPIGRTPRSNPATYTG+FTPIRELFAG  E
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           SRSRGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPD+YVPCDVCK KRYNRETLE++Y
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGK I E L+MT+E+AR FFD VP +ARKLQTLMDVGLSYI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           +RELSKRDTGKTLYILDEPTTGLHF DIQQLL VLHRLRDHGNTVVVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           ++DLGPEGG  GG IIA GTPE VA+++ S+T  +LKPLL
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLKPLL 939