Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 885 a.a., Excinuclease ABC subunit A paralog of unknown function from Pseudomonas fluorescens FW300-N2E2

 Score =  495 bits (1274), Expect = e-144
 Identities = 287/741 (38%), Positives = 399/741 (53%), Gaps = 73/741 (9%)

Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
           FS N P GAC  C GLG         ++ D +L++ + A+  W     +  Q L  +   
Sbjct: 146 FSPNTPQGACQECHGLGRVYEVTEASMVPDPSLTIRERAVAAWPMA--WQGQNLRDILVT 203

Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
             +DV  P+  L K+ ++ IL       +           R  ++ K  P     F G  
Sbjct: 204 LGYDVDIPWRDLPKQQRDWILFTEQTPTVPVYAGLTPAQTRAALKRKLEPSYQGTFSGAR 263

Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSI-- 435
             L   +  ++S  +R+ +A+Y+   PC  C+G RLK +A  V      +  +  L +  
Sbjct: 264 RYLLHTFMHSQSAQMRKRVAQYMRASPCPVCEGKRLKRQALTVTFAGLDIAELSHLPLLE 323

Query: 436 --------------------ADALTFFQELKLEGQRAQ---------------------- 453
                                D L+  Q  K   QRA                       
Sbjct: 324 LAEVLKRVLAPDYLEQAEETGDVLSHQQTRKAREQRAARGDNPHAGGPDARHTPNLSLEK 383

Query: 454 --IAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVL 511
              A+++  E+ +R+  L+++GL YL L RS  TLS GE QR+RLA+Q+ + L GV+YVL
Sbjct: 384 RLAAQRIAAELLERIVTLIDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVIYVL 443

Query: 512 DEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVV 571
           DEPS GLH  D+E L   L  L+  GN+V VVEHD D +R AD +ID+GP AG  GG V+
Sbjct: 444 DEPSAGLHPADSEALFGALQRLKAAGNSVFVVEHDLDTMRRADWLIDVGPDAGEQGGKVL 503

Query: 572 AEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPV 631
             G    +   P S T  YL G + +     RTP+D    + L+G   NNL N+  + P+
Sbjct: 504 YSGPPSGLGQVPESRTRAYLFGEEHVMARSPRTPRD---WLRLEGITRNNLDNLSAAFPL 560

Query: 632 GLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQ-------------GL 678
           G FT VTG+SGSGKS+L++     +    L  A+       +S++             GL
Sbjct: 561 GCFTAVTGISGSGKSSLVSQALLDLVGAHLGQASPNAEPDEQSLEDEPVQTSGGRVSAGL 620

Query: 679 EHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGR 738
           E   +++ +DQ PIGRTPRSN ATYTG+F  +R+LFA T +++  G+  GRFSFNV  GR
Sbjct: 621 EAVRRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATAQAQELGFDAGRFSFNVAKGR 680

Query: 739 CEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREF 798
           CE C+G+G + VE+ F+P VY PC  C G RYN +TLEV ++G  I +VL +TV  A E 
Sbjct: 681 CETCEGEGFVSVELLFMPSVYAPCPTCHGARYNPQTLEVNWQGLNISQVLQLTVNQALEV 740

Query: 799 FDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEP 858
           F       R LQ L D+GL Y+RLGQ AT LSGGEAQR+KLA EL ++  G TLY+LDEP
Sbjct: 741 FAEQAAARRSLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRKARGATLYVLDEP 800

Query: 859 TTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEG 918
           T GLH  D+ +LL  L+RL + G+TVVV+EH++ V+  +DW+ID+GP  G  GG ++A G
Sbjct: 801 TNGLHPQDVDRLLVQLNRLVEDGHTVVVVEHDMRVVAQSDWVIDIGPGAGSQGGNVVACG 860

Query: 919 TPEDVAQIEASHTARFLKPLL 939
            PE+VA    S TA FLK  L
Sbjct: 861 APEEVAACRESRTAEFLKRAL 881



 Score =  134 bits (338), Expect = 2e-35
 Identities = 67/130 (51%), Positives = 94/130 (72%), Gaps = 2/130 (1%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + VRGAR HNLKN+++ IPRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 20  VRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 79

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
            +  +  PDVD IEGL PA++++Q+  + + RS++G++T +   +R+LY+R G    P  
Sbjct: 80  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSMGSVTTLSSLIRMLYSRAGS--YPAD 137

Query: 124 QVPLKAQTIS 133
           Q  L A+  S
Sbjct: 138 QPMLYAEDFS 147



 Score = 53.9 bits (128), Expect = 4e-11
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAP 671
           V ++GA  +NLKNVD+ IP       TGVSGSGKS+L   T +  A          + AP
Sbjct: 20  VRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY----FESVAP 75

Query: 672 YR----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELF--AGTQE 719
           Y            +  +E     + + Q     + RS+  + T + + IR L+  AG+  
Sbjct: 76  YARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSMGSVTTLSSLIRMLYSRAGSYP 135

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVI--KVEMHFLPD 757
           +         FS N   G C+ C G G +    E   +PD
Sbjct: 136 ADQPMLYAEDFSPNTPQGACQECHGLGRVYEVTEASMVPD 175



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D + + G   +NL N++   P      +TG+SGSGKSSL    L  +    ++   S  A
Sbjct: 539 DWLRLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQAL-LDLVGAHLGQASPNA 597

Query: 62  RQFLSLMEKPDVD--------HIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
                 +E   V          +E +   + ++QK     PRS + T T ++D++R L+A
Sbjct: 598 EPDEQSLEDEPVQTSGGRVSAGLEAVRRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFA 657

Query: 114 RVGE 117
              +
Sbjct: 658 ATAQ 661



 Score = 26.2 bits (56), Expect = 0.010
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLG 283
           D   ++F+A       G+         FSFN   G C TC+G G
Sbjct: 650 DHVRKLFAATAQAQELGFDAGR-----FSFNVAKGRCETCEGEG 688