Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 947 a.a., excinuclease ABC, A subunit from Pseudomonas stutzeri RCH2

 Score = 1447 bits (3746), Expect = 0.0
 Identities = 710/941 (75%), Positives = 818/941 (86%), Gaps = 3/941 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI +RGARTHNLKNI+LT+PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H  PL+AQT+SQMVD+VL LPEG K+MLLA +++ERKGEH+   + L AQGF+RAR++
Sbjct: 121 PDHDAPLEAQTVSQMVDQVLALPEGRKLMLLAPVIRERKGEHLAVFDELRAQGFVRARVN 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPME-- 238
           G   +L + PKL+  KKH+I+V+VDRFKVR DLQQRLAESFETAL+L+ GI +VA ME  
Sbjct: 181 GRLYELDELPKLDKQKKHSIDVVVDRFKVRGDLQQRLAESFETALKLADGIALVASMEEE 240

Query: 239 GDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDAN 298
            + EE IFSA FACP CG+S+ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ +  
Sbjct: 241 DESEEMIFSARFACPICGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDAKRLV-NGE 299

Query: 299 LSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFK 358
           L+LA+GAIRGWD++N YYFQML +LA HY F +  PF+ L+   Q+ IL GSGR  +EF+
Sbjct: 300 LTLAEGAIRGWDRRNVYYFQMLGSLASHYGFSLDEPFDSLAADHQKSILRGSGRESVEFR 359

Query: 359 YINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEAR 418
           Y+NDRGDI  + HPFEGI+ NLERRYR+TESNSVREELAKY+S +PC  C GTRL+ EAR
Sbjct: 360 YLNDRGDIVKRSHPFEGIIPNLERRYRETESNSVREELAKYLSTQPCPDCRGTRLRREAR 419

Query: 419 NVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLN 478
           +V++ D  LP +  + I DA  +F  L L G+R +IA+K++KEI +RLQFLVNVGL+YL 
Sbjct: 420 HVWVGDRTLPAVTAMPIGDATDYFGGLSLSGRRGEIADKILKEIRERLQFLVNVGLDYLT 479

Query: 479 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGN 538
           L RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDNERLL TL HLR++GN
Sbjct: 480 LDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLRHLRDIGN 539

Query: 539 TVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIA 598
           TV+VVEHDEDAIR+AD+V+DIGPGAGVHGG +VAEG  +E++A+P+SLTG+YLSG  KI 
Sbjct: 540 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLSGRVKIN 599

Query: 599 VPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH 658
              +RT +D KK ++LKGA GNNL+NVDL IPVGL TC+TGVSGSGKSTLIN+T F I  
Sbjct: 600 YRPERTRRDPKKLLKLKGARGNNLRNVDLEIPVGLLTCITGVSGSGKSTLINNTLFPITA 659

Query: 659 TALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 718
           TALNGA+T   AP+ S  GL+H DKV+DIDQSPIGRTPRSNPATYTG+FTPIRELFAG  
Sbjct: 660 TALNGASTLEVAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVP 719

Query: 719 ESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVR 778
           E+RSRGY PGRFSFNV+GGRCEACQGDGVIKVEMHFLPD+YVPCDVCKGKRYNRETLEV+
Sbjct: 720 EARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEVK 779

Query: 779 YKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
           YKGK+I EVLDMT+E+AREFFDPVP +ARKLQTLMDVGLSYI+LGQSATTLSGGEAQRVK
Sbjct: 780 YKGKSITEVLDMTIEEAREFFDPVPAVARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVK 839

Query: 839 LARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L+RELSKRDTGKTLYILDEPTTGLHF DIQQLL VLHRLRDHGNTVVVIEHNLDVIKTAD
Sbjct: 840 LSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTAD 899

Query: 899 WIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           W++DLGPEGG  GG IIA GTPE+VA +  SHT  FLKPLL
Sbjct: 900 WLVDLGPEGGSKGGQIIACGTPEEVAGMAQSHTGHFLKPLL 940