Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 970 a.a., excinuclease ABC subunit UvrA from Synechocystis sp000284455 PCC 6803

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 542/974 (55%), Positives = 696/974 (71%), Gaps = 46/974 (4%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           + I +RGAR HNLKN+NL +PRD+LIV TG+SGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 5   NSIRIRGARQHNLKNVNLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 64

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCP 121
           RQFL  ++KPDVD IEGLSPAISI+QKSTSHNPRSTVGT+TE+YDYLRLL+ R G P CP
Sbjct: 65  RQFLGQLDKPDVDSIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGSPHCP 124

Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDG 181
             Q  +  QTI QM D+V+ELP+ +K  +LA +VK +KG HV+ L +L +QGF+R RI+G
Sbjct: 125 HCQRNIAPQTIDQMCDRVMELPDRTKFQILAPVVKGKKGTHVQLLSSLVSQGFVRVRING 184

Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVV------- 234
           E  +L+D  +L+ ++ HTIE+++DR   +  LQ+RL +S  T L+ + G  ++       
Sbjct: 185 EVRELSDNIELKKNQAHTIEIVIDRLIKKEGLQERLVDSLSTCLKQAEGTAIIDILDKPT 244

Query: 235 -APMEGD---------------------GEEQIFSANFACPHCGYSMRELEPRLFSFNNP 272
            A ++G                       +E IFS NFACP  G  M EL PRLFSFN+P
Sbjct: 245 LAVLDGGKKDDKEALKAAENGQAYHAELPKEIIFSENFACPEHGAVMDELSPRLFSFNSP 304

Query: 273 AGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQK-NFYYFQMLTALAEHYDFDV 331
            GACP C G+G  + F PD VI D    +   AI  W +K N YY  +L +L +H+DF +
Sbjct: 305 YGACPDCHGIGFVRSFCPDLVIPDPEKPV-YVAIAPWSEKDNSYYLSLLYSLGQHFDFQL 363

Query: 332 HTPFNKLSKKIQEIILHGSGRT---EIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTE 388
            TP+ KL+K+ +EIIL+G+      E E +Y N +G  R     F G L+ L++ Y +T 
Sbjct: 364 QTPWKKLTKEQKEIILYGTEEEIWFEGESRYRNKQGYYR----RFAGALNILQKNYDETN 419

Query: 389 SNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLE 448
           S++++++L KYI N+PC +C G RLK EA  V +    +  +  + I   L   + L+L 
Sbjct: 420 SDAIKQKLEKYIINQPCHTCGGKRLKPEALAVKLGQYNINNLTSVPIRQTLERIENLELT 479

Query: 449 GQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM 508
            ++A I E  +KEI  RLQFL++VGL+YL L R+A TLSGGEAQRIRLA+QIG+GL GV+
Sbjct: 480 SRQAMIGELALKEIKARLQFLLDVGLDYLTLDRAAMTLSGGEAQRIRLATQIGSGLTGVL 539

Query: 509 YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGG 568
           YVLDEPSIGLHQRDN RLL TLT LR+LGNT++VVEHDED IR AD+++DIGP AG+HGG
Sbjct: 540 YVLDEPSIGLHQRDNNRLLATLTKLRDLGNTLIVVEHDEDTIRHADYIVDIGPKAGIHGG 599

Query: 569 MVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLS 628
            +V +G+ + ++ N  SLTG YLSG + IA PE+R   +  K + L+G   NNL+N+D++
Sbjct: 600 EIVCQGDFQTLLKNQRSLTGAYLSGREAIATPEERRNGNGAK-LTLQGCCHNNLRNIDVT 658

Query: 629 IPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN---GATTATPAPYRSIQGLEHFDKVI 685
           IP+G   CVTGVSGSGKSTL+N+    + H AL        A P     I GL+  DKVI
Sbjct: 659 IPLGKLVCVTGVSGSGKSTLVNE----LLHPALQHYLSRQVAFPKNLGEITGLQAIDKVI 714

Query: 686 DIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGD 745
            IDQSPIGRTPRSNPATYTGIF  IRE+F  T E+++RGY+PG+FSFNV+GGRCEAC G 
Sbjct: 715 VIDQSPIGRTPRSNPATYTGIFDSIREIFTQTIEAKARGYKPGQFSFNVKGGRCEACAGQ 774

Query: 746 GVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVI 805
           GV  +EM+FLPDVYV CDVCKG RYNRETL+V+YKG +I +VL MT E+A   F+ +P  
Sbjct: 775 GVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGHSIADVLAMTTEEALTVFENIPRA 834

Query: 806 ARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFH 865
             +LQTL+DVGL YI+LGQ A TLSGGEAQRVKLA ELS+R TGKTLY++DEPTTGL F+
Sbjct: 835 VNRLQTLVDVGLGYIKLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFY 894

Query: 866 DIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQ 925
           D+  LL+VL RL D GN+V+VIEHNLDVI+ +DWIIDLGPEGG  GG I+  GTPE VAQ
Sbjct: 895 DVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWIIDLGPEGGDRGGKIMVAGTPETVAQ 954

Query: 926 IEASHTARFLKPLL 939
             +S+T ++L  +L
Sbjct: 955 HPSSYTGKYLAKVL 968



 Score = 58.9 bits (141), Expect = 2e-12
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 609 KKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTAT 668
           + ++ ++GA  +NLKNV+L +P       TGVSGSGKS+L  DT F         + +A 
Sbjct: 4   QNSIRIRGARQHNLKNVNLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAY 63

Query: 669 PAPY------RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELF 714
              +        +  +E     I IDQ      PRS   T T I+  +R LF
Sbjct: 64  ARQFLGQLDKPDVDSIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLF 115