Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score = 1032 bits (2668), Expect = 0.0
 Identities = 539/983 (54%), Positives = 692/983 (70%), Gaps = 57/983 (5%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D+I VRGAR HNL+N++L +PR++LIV TG+SGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 26  DQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 85

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCP 121
           RQFL  ++KPDVD IEGLSPAISI+QKSTSHNPRSTVGT+TE+YDYLRLL+ R G P CP
Sbjct: 86  RQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCP 145

Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDG 181
                +  QTI QMVD++ ELP+ S+  +LA +V+ +KG H K L +LAA+GF+R RI+G
Sbjct: 146 HCDRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRING 205

Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD- 240
           E  +L+D  +L+ +  HTIE++VDR   ++ +Q+RL +S  T L  S GI V+  + GD 
Sbjct: 206 EVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVLPGDR 265

Query: 241 ---------------------------GEEQIFSANFACPHCGYSMRELEPRLFSFNNPA 273
                                      G E +FS NFACP  G  M EL PRLFSFN+P 
Sbjct: 266 GNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSFNSPY 325

Query: 274 GACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNF-YYFQMLTALAEHYDFDVH 332
           GAC  C GLG  + F P+ V+ D NL +   AI  W +K+  YYF +L  +AE   F++ 
Sbjct: 326 GACSHCHGLGTLRTFSPELVVPDPNLPV-YAAIAPWSEKDHSYYFNLLCGVAEVSGFEIS 384

Query: 333 TPFNKLSKKIQEIILHGSGR-----TEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDT 387
             +  L+   Q  IL GS       T+  F+      D  L   PFEG++  LER+YR+T
Sbjct: 385 DRWQDLTPDQQHAILFGSSEPIAVETDSRFR------DRHLYHRPFEGVIPILERQYRET 438

Query: 388 ESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQEL-- 445
            S   +++L KY+ ++ C  C G RLK E+  V +    +  +  +S+ + L   + L  
Sbjct: 439 SSEVYKQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECLNKIEALIG 498

Query: 446 ------KLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQ 499
                  L  ++ QI + V++EI  RL+FL++VGL+YL L R A TLSGGEAQRIRLA+Q
Sbjct: 499 SDNREPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQ 558

Query: 500 IGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDI 559
           IGAGL GV+YVLDEPSIGLHQRDN+RLL TL  LR+LGNT++VVEHDED IR ADH++DI
Sbjct: 559 IGAGLTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDI 618

Query: 560 GPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVG 619
           GPGAGVHGG +VA+GN+ +++    SLTG YLSG ++IA P+ R   + ++ + L+GA  
Sbjct: 619 GPGAGVHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRAGNGRRLL-LQGANR 677

Query: 620 NNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN---GATTATPAPYRSIQ 676
           NNL+N+D+ IP+G   C+TGVSGSGKSTLIN+    + H AL    G     P     ++
Sbjct: 678 NNLQNLDVEIPLGKLVCITGVSGSGKSTLINE----LLHPALEHSLGLKVPFPKGLAVLK 733

Query: 677 GLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRG 736
           G +  DKVI IDQSPIGRTPRSNPATYTG F PIR++FA T E+++RGYQPG+FSFNV+G
Sbjct: 734 GTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKG 793

Query: 737 GRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAR 796
           GRCEAC G GV  +EM+FLPDVYV CDVCKG RYNRETL+V+YKGKTI +VL+MTVE+A 
Sbjct: 794 GRCEACGGQGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAA 853

Query: 797 EFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD 856
           +FF+ +P  + +LQTL+DVGL Y+RLGQ A TLSGGEAQRVKLA EL++R TGKTLY++D
Sbjct: 854 QFFENIPQASSRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTLYLID 913

Query: 857 EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIA 916
           EPTTGL F+D+ +LL V+ RL D GN++VVIEHNLDVI+ ADWIIDLGPEGG  GG I+ 
Sbjct: 914 EPTTGLSFYDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVV 973

Query: 917 EGTPEDVAQIEASHTARFLKPLL 939
            G PE VA    SHT R+L  +L
Sbjct: 974 CGEPEIVATHNQSHTGRYLAQVL 996