Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., Excinuclease ABC, A subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 1152 bits (2981), Expect = 0.0
 Identities = 575/943 (60%), Positives = 736/943 (78%), Gaps = 9/943 (0%)

Query: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           +I VRGAR HNL+N+++T+PRDKL+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYAR
Sbjct: 5   EIRVRGAREHNLRNVDVTLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 64

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPE 122
           QFL +M+K DVD IEGLSPAISIEQK+TS NPRSTVGT+TE++DY+RLL+AR+G P  P 
Sbjct: 65  QFLEMMQKSDVDSIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARIGVPHSPA 124

Query: 123 HQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGE 182
             +P+++QT+SQMVD+ L LPEG+++ LLA + + RKGE  K L  L  +GF R ++DG 
Sbjct: 125 TGLPIESQTVSQMVDRTLALPEGTRLYLLAPVARGRKGEFKKELAELQKKGFSRVKVDGT 184

Query: 183 TCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDGE 242
             ++ + P L    KH IEV+VDR  VR+D+  RLA+SFETALELS G+V  A     GE
Sbjct: 185 IYEIPEVPALNKKIKHDIEVVVDRLVVRADIASRLADSFETALELSDGLVF-AEDAVSGE 243

Query: 243 EQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLA 302
              FSA FACP  G+++ E+EPRLFSFNNP GACPTCDGLGV  YFDP+ V+ D + +L 
Sbjct: 244 RHTFSARFACPVSGFTIDEIEPRLFSFNNPFGACPTCDGLGVTLYFDPELVVPDPSRTLN 303

Query: 303 QGAIRGWDQK---NFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           +GA+  W  +   + YY Q L ++A H+  D+ TP+  L ++++ IIL GSG+  I   +
Sbjct: 304 RGAVAPWSGQTPPSPYYAQALASIAAHFGADMDTPWKDLPEEMRRIILEGSGKEIIPLSF 363

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
            +     R +K PFEG++ N+ RR+R+TESN +R+EL++Y  + PC +C G RLK +A  
Sbjct: 364 DDGTRSYRTQK-PFEGVIPNIARRWRETESNWIRDELSRYQGSAPCPACGGYRLKPQALA 422

Query: 420 VFINDTALPTIVELSIADALTFFQ--ELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYL 477
           V IN   +    E+SIA+A  +F   E KL  +  +IA+++++EIN+RL FL NVGL+YL
Sbjct: 423 VKINGRHIGEASEVSIAEARAWFAGLEAKLSPKHREIADRILREINERLGFLGNVGLDYL 482

Query: 478 NLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLG 537
           +LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL  LR++G
Sbjct: 483 SLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLITLKRLRDIG 542

Query: 538 NTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKI 597
           NTV+VVEHDEDAIR AD+++D+GPGAGVHGG +VA+G  E+++ANP SLTGQYL+G + +
Sbjct: 543 NTVIVVEHDEDAIRNADYLVDMGPGAGVHGGTIVAQGTPEQVMANPASLTGQYLTGKRSV 602

Query: 598 AVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIA 657
            VP  R   + K  + L+GA  NNL+NVD+SIP+G FTC+TGVSG GKSTL+ +T +K  
Sbjct: 603 PVPTVRRQGNGK-VLTLRGARANNLQNVDVSIPLGTFTCITGVSGGGKSTLVLETLYKAL 661

Query: 658 HTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGT 717
              L+GA    P  + +I+G E  DK++DIDQSPIGRTPRSNPATYTG FTPIR+ F+G 
Sbjct: 662 ARQLHGARDL-PGEHDAIEGAEQIDKIVDIDQSPIGRTPRSNPATYTGAFTPIRDWFSGL 720

Query: 718 QESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEV 777
            E+++RGY+PGRFSFNV+GGRCEACQGDG+IK+EMHFLPDVYV CDVCKGKRYNRETL+V
Sbjct: 721 PEAKARGYKPGRFSFNVKGGRCEACQGDGLIKIEMHFLPDVYVTCDVCKGKRYNRETLDV 780

Query: 778 RYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRV 837
            +KGK+I +VLDMT+E+A +FF  VP +  K++ L  VGL YIRLGQ ATTLSGGEAQRV
Sbjct: 781 TFKGKSIADVLDMTIEEAGDFFKAVPAVRDKMEMLQQVGLDYIRLGQQATTLSGGEAQRV 840

Query: 838 KLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTA 897
           KLA+ELS+R TG+TLYILDEPTTGLHF D+++L+ VL  L D GNTVVVIEHNL+VIKTA
Sbjct: 841 KLAKELSRRATGRTLYILDEPTTGLHFEDVRKLMEVLQALVDTGNTVVVIEHNLEVIKTA 900

Query: 898 DWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN 940
           D IID+GPEGG GGG ++A+GTPE+VA   ASHT  +LKP L+
Sbjct: 901 DHIIDMGPEGGSGGGRVVAQGTPEEVAANPASHTGSYLKPYLS 943