Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1005 a.a., excinuclease ABC subunit UvrA from Rhodopseudomonas palustris CGA009
Score = 1178 bits (3047), Expect = 0.0
Identities = 600/971 (61%), Positives = 736/971 (75%), Gaps = 38/971 (3%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLKN+++TIPRDKL+V TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 20 ITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 79
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+ARVG P P
Sbjct: 80 FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPAT 139
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
+P+++QT+SQMVD+VL LPEG+++ LLA +V+ RKGE+ K L + +GF R +IDG
Sbjct: 140 GLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKELADWLKKGFQRVKIDGAF 199
Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVA-------- 235
+L + P L+ H I+V+VDR VR D+ QRLAESFETAL+L+ G+ V+
Sbjct: 200 HELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETALKLAEGLAVIEYADAPAAP 259
Query: 236 PMEGDGEEQ------------------------IFSANFACPHCGYSMRELEPRLFSFNN 271
P G+++ +FS FACP G+++ E+EPRLFSFNN
Sbjct: 260 PTAEPGQDEPADKKKKADKKVAKIHDKSGAERILFSEKFACPVSGFTIPEIEPRLFSFNN 319
Query: 272 PAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNF-YYFQMLTALAEHYDFD 330
P GACP C GLG++Q+ D D V+ D L+L +GAI W + + YY Q LTAL +HY F
Sbjct: 320 PYGACPECGGLGIEQHIDADLVVPDKELTLRKGAIAPWAKSSSPYYLQTLTALGKHYKFT 379
Query: 331 VHTPFNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESN 390
+ T + L KK+Q ++LHGSG EI+F Y + KK PFEG++ N+ERR+R+TES
Sbjct: 380 LDTKWKDLPKKVQNVLLHGSGDDEIKFSYEDGVRSYDTKK-PFEGVVTNIERRFRETESE 438
Query: 391 SVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELK--LE 448
REEL KY S+ PC +C G RLK EA V + + + ELS+ A +F ++ L
Sbjct: 439 WAREELGKYFSDVPCDACHGHRLKPEALCVKVGGKHIGEVSELSVKAAGDWFAKVPEVLN 498
Query: 449 GQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM 508
Q+ +IA +++KEI DRL FL++VGLNYL LSRS+ TLSGGE+QRIRLASQIG+GL GV+
Sbjct: 499 KQQNEIAVRILKEIRDRLSFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVL 558
Query: 509 YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGG 568
YVLDEPSIGLHQRDN RLL TL LR+LGNTV+VVEHDEDAI +ADHV+DIGPGAGVHGG
Sbjct: 559 YVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAILLADHVLDIGPGAGVHGG 618
Query: 569 MVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLS 628
++A+G EI+ NP SLTG+YL+G + VPE+R P ++T++L A GNNLKNV
Sbjct: 619 HIIAQGTPAEIMRNPKSLTGKYLTGELSVPVPERRPPNH-RRTLKLVNARGNNLKNVTAE 677
Query: 629 IPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDID 688
IP+GLFTCVTGVSG GKSTL+ DTF+K LN A+ PAPY I+GLEH DK+IDID
Sbjct: 678 IPLGLFTCVTGVSGGGKSTLLIDTFYKAIARKLNNASEP-PAPYDRIEGLEHIDKIIDID 736
Query: 689 QSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVI 748
QSPIGRTPRSNPATYTG FTPIRE FAG ES++RGY+PGRFSFNV+GGRCEACQGDGVI
Sbjct: 737 QSPIGRTPRSNPATYTGAFTPIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDGVI 796
Query: 749 KVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARK 808
K+EMHFLPDVYV CDVCKGKRYNRETL+V +KGK+I +VLDMT+E+A EFF VP +
Sbjct: 797 KIEMHFLPDVYVTCDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFFKAVPRVRET 856
Query: 809 LQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQ 868
+TL VGL YI +GQ ATTLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHFHD+
Sbjct: 857 FKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDVA 916
Query: 869 QLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEA 928
+LL VLH L GNTVVVIEHNL+VIKTADW+IDLGPEGG GGG I+A G PED+ +
Sbjct: 917 KLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPR 976
Query: 929 SHTARFLKPLL 939
S+T +FLKP+L
Sbjct: 977 SYTGKFLKPVL 987
Score = 133 bits (335), Expect = 5e-35
Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 15/210 (7%)
Query: 405 CSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIND 464
C C G R E +V ++ +++++I +A FF K + + +
Sbjct: 810 CDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFF--------------KAVPRVRE 855
Query: 465 RLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRDN 523
+ L VGL+Y+++ + A TLSGGEAQR++LA ++ G +Y+LDEP+ GLH D
Sbjct: 856 TFKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDV 915
Query: 524 ERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANP 583
+LL+ L L GNTV+V+EH+ + I+ AD VID+GP G GG +VA G E+I+ P
Sbjct: 916 AKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAP 975
Query: 584 NSLTGQYLSGVKKIAVPEQRTPKDAKKTVE 613
S TG++L V + P + + A + E
Sbjct: 976 RSYTGKFLKPVLEKKGPAKALKRKADEAAE 1005
Score = 58.2 bits (139), Expect = 3e-12
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 601 EQRTPKDAKKT-VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
+++TP + +T + ++GA +NLKNVD++IP TG+SGSGKS+L DT +
Sbjct: 8 KRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQR 67
Query: 660 ALNGATTATPAPYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIREL 713
+ +A + + D++ I I+Q + PRS T T I+ +R L
Sbjct: 68 RYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLL 127
Query: 714 FA 715
+A
Sbjct: 128 WA 129