Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., uvrA paralog in Bacteroidetes (from data) from Pedobacter sp. GW460-11-11-14-LB5

 Score =  812 bits (2097), Expect = 0.0
 Identities = 432/948 (45%), Positives = 605/948 (63%), Gaps = 38/948 (4%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I ++GAR HNLKNI++ IP++KL+V+TG+SGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 14  IIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 73

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           F+  M KPDVD+I+G++PAI+IEQK  + NPRSTVGT TE+YDYL+LL++R+G+   P  
Sbjct: 74  FMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFSRIGKTISPVS 133

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGE- 182
              +K  ++S +VD V  +PE + + +   +         + L  L  +GF+R  I+ + 
Sbjct: 134 GKEVKKDSVSTVVDYVNAMPEDTTVTIFCPLYPHNNRTIKEELAILLQKGFLRVLINDKI 193

Query: 183 -----TCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQ--QRLAESFETALELSGGIVVVA 235
                  D  D    EL    T+++++DR     + +   RLA+S +TA     G   V 
Sbjct: 194 EKIETVLDDADFKDAELTDDKTVQILIDRIVTNQEEETLSRLADSAQTAFFEGKGDCYV- 252

Query: 236 PMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQ 295
             E  G  + FS  F     G    E  P  FSFNNP GAC  C+G G     D D VI 
Sbjct: 253 --EAQGTTKHFSDRFELD--GIKFEEPTPNFFSFNNPYGACKRCEGYGNVIGIDEDLVIP 308

Query: 296 DANLSLAQGAIRGW-DQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTE 354
           D + S+   AI  W  +K   + Q     A  ++F +H P++ L++  Q+++  G+    
Sbjct: 309 DKSKSVYDNAIAPWRGEKMNVWLQNFIKAAPKFEFPIHRPYSALTETEQQLLWTGN---- 364

Query: 355 IEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLK 414
              KY             F G+    +     T     R  L++Y     C  C G+RL+
Sbjct: 365 ---KY-------------FAGLDAFFKELEEQTYKIQYRVMLSRYRGKTTCPDCKGSRLR 408

Query: 415 IEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGL 474
            +A  V I + ++  +V + +A AL FF ELKL     +IA++++ EI++R  +L NVGL
Sbjct: 409 KDASYVKIAEKSIIDVVLMPLAKALVFFNELKLNTNDTKIAKRLLAEIDNRFLYLNNVGL 468

Query: 475 NYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLR 534
            YL L+R + TLSGGE+QRI LA+ +G+ LVG +YVLDEPSIGLH RD  +L++ L  LR
Sbjct: 469 GYLTLNRLSNTLSGGESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTNKLIEVLISLR 528

Query: 535 NLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGV 594
           N+GNTVLVVEH+E+ +R AD++IDIGP AG HGG +V  GN EEI+ + NSLTG+YLSG+
Sbjct: 529 NVGNTVLVVEHEEEMMRAADYIIDIGPEAGTHGGNLVFSGNYEEILKDKNSLTGRYLSGL 588

Query: 595 KKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF 654
           +KIA+P++R  +  K  + +KGA  NNL+N+D+  P+G+FT V+GVSGSGK++L+    +
Sbjct: 589 EKIAIPDKR--RKWKDHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSLVKKILY 646

Query: 655 KIAHTALNGATTATPAPYRSIQGLEHFDKVID-IDQSPIGRTPRSNPATYTGIFTPIREL 713
                A+          Y  I G       ++ +DQ+PIGR+ RSNP TY   +  IR L
Sbjct: 647 PALQKAIGNYAGEQTGAYDGIFGNYDLVSAVEMVDQNPIGRSSRSNPVTYVKAWDDIRAL 706

Query: 714 FAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRE 773
           F+G   +++ G +P  FSFNV GGRC+ CQG+G +K+EM F+ D+Y+PC+ C GKR+ ++
Sbjct: 707 FSGLASAKAAGLKPAAFSFNVEGGRCDVCQGEGEVKIEMQFMADIYLPCEACNGKRFKQQ 766

Query: 774 TLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGE 833
            L+V YK K + E+LDMT+E+A EFF     I  KL  L+DVGL Y+ LGQS+ TLSGGE
Sbjct: 767 VLDVTYKEKNVSEILDMTIEEAVEFFKDEQKILNKLNPLVDVGLGYVHLGQSSNTLSGGE 826

Query: 834 AQRVKLARELSK-RDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLD 892
           AQR+KLA  L K  +  KTL+I DEPTTGLHFHDI++LL  L+ L + GNT++VIEHN+D
Sbjct: 827 AQRIKLASFLIKGNNANKTLFIFDEPTTGLHFHDIKKLLKALNTLIEQGNTILVIEHNMD 886

Query: 893 VIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN 940
           +IK ADW+ID+GPEGG GGG ++ EG PED+ Q+E S+T ++L   LN
Sbjct: 887 MIKCADWVIDIGPEGGDGGGQVVFEGIPEDLVQVEKSYTGKYLASHLN 934



 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTA 660
           ++   KD  K + +KGA  +NLKN+D++IP      VTG+SGSGKS+L  DT +      
Sbjct: 3   KKEAEKDPHKNIIIKGARVHNLKNIDVAIPKNKLVVVTGMSGSGKSSLAFDTLYAEGQRR 62

Query: 661 LNGATTATPAPYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIRELF 714
              + ++    +         D +      I I+Q  I   PRS   T T I+  ++ LF
Sbjct: 63  YVESLSSYARQFMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLF 122

Query: 715 A 715
           +
Sbjct: 123 S 123



 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D I ++GAR +NL+NI++  P      ++G+SGSGK+SL    LY   Q+          
Sbjct: 602 DHILIKGARENNLQNIDVKFPLGVFTAVSGVSGSGKTSLVKKILYPALQKAIGNYAGEQT 661

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
             +  +    D+     +S    ++Q     + RS   T  + +D +R L++
Sbjct: 662 GAYDGIFGNYDL-----VSAVEMVDQNPIGRSSRSNPVTYVKAWDDIRALFS 708