Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., excinuclease ABC, A subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1548 bits (4009), Expect = 0.0
 Identities = 758/939 (80%), Positives = 841/939 (89%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLL+ARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P H  PL AQT+SQMVDKVL LPEGS+ MLLA ++ +RKGEHVK L++LAAQGFIRARID
Sbjct: 121 PTHNQPLAAQTVSQMVDKVLTLPEGSRQMLLAPVINDRKGEHVKLLDSLAAQGFIRARID 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           GE CDL+DPP LELH KHTIEV+VDRFKVR DLQQRLAESFETALELSGGI  VA M+GD
Sbjct: 181 GEVCDLSDPPALELHVKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGIATVASMDGD 240

Query: 241 GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLS 300
            EE +FSANFAC HCGYSM ELEPR+FSFNNPAGACPTCDGLGVQQ+FD DRVI +  LS
Sbjct: 241 SEELLFSANFACTHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDADRVITNTELS 300

Query: 301 LAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYI 360
           LA GAIRGWD++NFYYFQMLT+LAEHY FDV  PF KLS KI+ I+LHGSG+  I FKYI
Sbjct: 301 LAGGAIRGWDRRNFYYFQMLTSLAEHYKFDVEAPFEKLSAKIRNIVLHGSGKESIAFKYI 360

Query: 361 NDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNV 420
           NDRGD+ ++ HPFEGIL+N++RRYR+TESN+VREELAKYI+ + CSSC G+RL+ EAR+V
Sbjct: 361 NDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKYINTQACSSCGGSRLREEARHV 420

Query: 421 FINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS 480
           FI D  LP + + SI +A+ +F++L L GQRAQIAEK++KE+ DRL FLVNVGLNYL+LS
Sbjct: 421 FIEDLNLPRLTDWSIGEAMEYFEQLSLTGQRAQIAEKILKEVRDRLGFLVNVGLNYLSLS 480

Query: 481 RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTV 540
           RSA+TLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TL HLR+LGNTV
Sbjct: 481 RSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTV 540

Query: 541 LVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP 600
           +VVEHDEDAIRMADH+IDIGPGAGVHGG V+ +G ++EI+A   S+TGQY+SG K+I + 
Sbjct: 541 IVVEHDEDAIRMADHIIDIGPGAGVHGGQVICDGPLKEIVACDESVTGQYISGKKQIHIS 600

Query: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTA 660
           E+R   DA K +EL GA GNNLK VDL+IPVGLFTCVTGVSGSGKSTLINDTF+KIAH  
Sbjct: 601 EKRAQYDASKVIELFGASGNNLKQVDLTIPVGLFTCVTGVSGSGKSTLINDTFYKIAHRQ 660

Query: 661 LNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES 720
           LNGAT   PAPY+ + G++H DKV+DIDQSPIGRTPRSNPATYTGIFTPIRELFA TQE+
Sbjct: 661 LNGATVDEPAPYKKVAGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAATQEA 720

Query: 721 RSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYK 780
           R+RGY+PGRFSFNV+GGRCEACQGDG+IKVEMHFLPDVYVPCD CK KRYNRETLEVRYK
Sbjct: 721 RTRGYKPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKSKRYNRETLEVRYK 780

Query: 781 GKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLA 840
           GK I EVL+MTVE+AREFFD VP IARKLQTLM+VGLSYI LGQSATTLSGGEAQRVKLA
Sbjct: 781 GKNIHEVLEMTVEEAREFFDAVPAIARKLQTLMEVGLSYIGLGQSATTLSGGEAQRVKLA 840

Query: 841 RELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWI 900
           +ELSKRDTGKTLYILDEPTTGLHF DIQ LL VLHRL+ HGNT+VVIEHNLDVIKTADWI
Sbjct: 841 KELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKAHGNTIVVIEHNLDVIKTADWI 900

Query: 901 IDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           +DLGPEGG GGG I+  GTPE VA+  +SHTARFLKPLL
Sbjct: 901 VDLGPEGGSGGGTILVSGTPEQVAEHPSSHTARFLKPLL 939



 Score =  130 bits (326), Expect = 5e-34
 Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 15/194 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC SC   R   E   V      +  ++E+++ +A  FF                +  I 
Sbjct: 761 PCDSCKSKRYNRETLEVRYKGKNIHEVLEMTVEEAREFFD--------------AVPAIA 806

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +LQ L+ VGL+Y+ L +SA TLSGGEAQR++LA ++     G  +Y+LDEP+ GLH  D
Sbjct: 807 RKLQTLMEVGLSYIGLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFAD 866

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            + LL  L  L+  GNT++V+EH+ D I+ AD ++D+GP  G  GG ++  G  E++  +
Sbjct: 867 IQLLLDVLHRLKAHGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVSGTPEQVAEH 926

Query: 583 PNSLTGQYLSGVKK 596
           P+S T ++L  + K
Sbjct: 927 PSSHTARFLKPLLK 940