Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 972 a.a., Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA from Mycobacterium tuberculosis H37Rv

 Score = 1074 bits (2777), Expect = 0.0
 Identities = 547/950 (57%), Positives = 701/950 (73%), Gaps = 19/950 (2%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D++ V+GAR HNL++++L +PRD LIV TGLSGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 3   DRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYA 62

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCP 121
           RQFL  M+KPDVD IEGLSPA+SI+QKST+ NPRSTVGTITEVYDYLRLLYAR G P CP
Sbjct: 63  RQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCP 122

Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDG 181
                +  QT  Q+VD+VL +PEG++ ++LA +V+ RKGE     + L AQG+ R R+DG
Sbjct: 123 TCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRKGEFADLFDKLNAQGYSRVRVDG 182

Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD- 240
               LTDPPKL+  +KH IEV+VDR  V++  ++RL +S ETAL L+ GIVV+  ++ + 
Sbjct: 183 VVHPLTDPPKLKKQEKHDIEVVVDRLTVKAAAKRRLTDSVETALNLADGIVVLEFVDHEL 242

Query: 241 ---GEEQIFSANFACPHCGYSMR--ELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQ 295
                EQ FS   ACP+ G+++   +LEPR FSFN+P GACP C GLG+++  DP+ V+ 
Sbjct: 243 GAPHREQRFSEKLACPN-GHALAVDDLEPRSFSFNSPYGACPECSGLGIRKEVDPELVVP 301

Query: 296 DANLSLAQGAIRGWDQKNF--YYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRT 353
           D + +LAQGA+  W   +   Y+ +M+  L E   FDV TP+ KL  K ++ IL G+   
Sbjct: 302 DPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEALGFDVDTPWRKLPAKARKAILEGADE- 360

Query: 354 EIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRL 413
           ++  +Y N  G  R     FEG+L  L+R+   TES  ++E    ++ + PC  C GTRL
Sbjct: 361 QVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPCPVCAGTRL 420

Query: 414 KIEARNVFI--------NDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDR 465
           K E   V +           ++  + ELSIAD   F   L L  +   IA +V+KEI  R
Sbjct: 421 KPEILAVTLAGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR 480

Query: 466 LQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNER 525
           L FL++VGL YL+LSR+A TLSGGEAQRIRLA+QIG+GLVGV+YVLDEPSIGLHQRDN R
Sbjct: 481 LGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRR 540

Query: 526 LLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNS 585
           L++TLT LR+LGNT++VVEHDED I  AD ++DIGPGAG HGG +V  G  +E++ N +S
Sbjct: 541 LIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDS 600

Query: 586 LTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGK 645
           +TG YLSG + I +P  R   D ++ + + GA  +NL+ +D+S P+G+ T VTGVSGSGK
Sbjct: 601 ITGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGK 660

Query: 646 STLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTG 705
           STL+ND    +    LNGA    P  +  + GL++ DK++ +DQSPIGRTPRSNPATYTG
Sbjct: 661 STLVNDILAAVLANRLNGARQV-PGRHTRVTGLDYLDKLVRVDQSPIGRTPRSNPATYTG 719

Query: 706 IFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVC 765
           +F  IR LFA T E++ RGYQPGRFSFNV+GGRCEAC GDG IK+EM+FLPDVYVPC+VC
Sbjct: 720 VFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 779

Query: 766 KGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQS 825
           +G RYNRETLEV YKGKT+ EVLDM++E+A EFF+P+  + R L+TL+DVGL Y+RLGQ 
Sbjct: 780 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQP 839

Query: 826 ATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVV 885
           A TLSGGEAQRVKLA EL KR TG+T+YILDEPTTGLHF DI++LL+V++ L D GNTV+
Sbjct: 840 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 899

Query: 886 VIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFL 935
           VIEHNLDVIKT+DWIIDLGPEGG GGG ++A+GTPEDVA + AS+T +FL
Sbjct: 900 VIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL 949



 Score =  137 bits (346), Expect = 3e-36
 Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 15/192 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   V      +  ++++SI +A  FF+ +                ++
Sbjct: 775 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--------------GVH 820

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
             L+ LV+VGL Y+ L + A TLSGGEAQR++LAS++     G  +Y+LDEP+ GLH  D
Sbjct: 821 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD 880

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
             +LL  +  L + GNTV+V+EH+ D I+ +D +ID+GP  G  GG VVA+G  E++ A 
Sbjct: 881 IRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 940

Query: 583 PNSLTGQYLSGV 594
           P S TG++L+ V
Sbjct: 941 PASYTGKFLAEV 952