Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

 Score = 1025 bits (2650), Expect = 0.0
 Identities = 532/956 (55%), Positives = 696/956 (72%), Gaps = 23/956 (2%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M  I ++GAR HNLKNI+LT+PR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TE+YDYLRLLYAR+G P C
Sbjct: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           PEH + +++Q+  ++ +K+ E      + +L+ IV+++KG + K  ++L ++GF R R++
Sbjct: 121 PEHNIRIESQSPEKIAEKIEE-EFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           GE     D   LE +KKH IE+++DR   + D   RL E+ E ALE SGG+++V   + +
Sbjct: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNN 238

Query: 241 GE-EQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
            E E+I+S+N ACP CG S  EL+PR+FSFN+P GAC  C GLG++  FD D +I D N 
Sbjct: 239 EEFEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298

Query: 300 SLAQGAIRGWDQKNF---YYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIE 356
            +A GA+  +  +NF   Y  Q L A+A H+ F V TP   LSK+  +I+++GS   +I 
Sbjct: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPE-KIH 355

Query: 357 FKYINDRGDIRLKKH-PFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKI 415
           FK  N  GD    ++ P+EG++    R Y +T+S   R+EL K++    C  C G RLK 
Sbjct: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415

Query: 416 EARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLN 475
           +A  V I D ++  + +LSI+ A  FF  LKL  +  +IA++V+KEI  RL+FL +VGL 
Sbjct: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475

Query: 476 YLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRN 535
           YL LSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L++TL  LRN
Sbjct: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535

Query: 536 LGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVK 595
           L NT++VVEHDED I  AD+V+D+GPGAGVHGG VVA G   EI  N +SLTG+YLSG  
Sbjct: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLTGKYLSGEL 595

Query: 596 KIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFK 655
           KI +P+ R   D  K ++L     NNLKNV + IP G+F  +TGVSGSGKSTLI +  + 
Sbjct: 596 KIEIPKNRRKSD--KFLKLSNCRQNNLKNVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653

Query: 656 IAHTALNGATTATPAPYR-----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYT 704
                +    +     +            +++     DKV+ IDQSPIGRTPRSNPATYT
Sbjct: 654 ALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713

Query: 705 GIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDV 764
            +F  IR++FA T+E++ +GY PGRFSFNV+GGRCE CQGDGVIK+EM+FLPDV+V C+ 
Sbjct: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773

Query: 765 CKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQ 824
           CKG RYN ETLEV+YKGK+I +VL+M+VE+ARE F  +P I+ KL+TL DVGL YI+LGQ
Sbjct: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833

Query: 825 SATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTV 884
           S+TTLSGGEAQR+KL RELSKR TG T+Y+LDEPTTGLHFHD+++L+ VL+ L + GNTV
Sbjct: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893

Query: 885 VVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN 940
           VVIEHNLDVIK AD IIDLGPEGG+ GG IIA GTPE++A+ + SHT +FLK +L+
Sbjct: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNILS 949