Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 753 a.a., putative excinuclease ABC subunit A from Klebsiella michiganensis M5al

 Score =  418 bits (1074), Expect = e-121
 Identities = 256/696 (36%), Positives = 378/696 (54%), Gaps = 81/696 (11%)

Query: 253 PHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIR----- 307
           P  GYS       +FSFN+PAG C TCDGLG+    D D++I D+NLSL  GAIR     
Sbjct: 121 PFVGYS------NVFSFNHPAGMCATCDGLGIASTIDIDQLI-DSNLSLNAGAIRYPSFA 173

Query: 308 --GWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYINDRGD 365
              W  K + Y  +         FD        SK+ +E++L+    T           +
Sbjct: 174 PGSWRWKRYVYSGL---------FDADKKIADYSKEERELLLYADNLTP----------E 214

Query: 366 IRLKKHP----FEGILHNLERRYRDTESNSVR-EELAKYISNKPCSSCDGTRLKIEARNV 420
             L   P    FEG++    R Y   E+   + EE  + +S + C SC G RL  +  + 
Sbjct: 215 APLAGWPKSAKFEGVITRFTRSYLKQETKDTKTEEFQRVVSLQVCPSCQGMRLNEKILSC 274

Query: 421 FINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS 480
            I    +     L + +   F ++L     R      +++ + +RL  +  VGL YL+L+
Sbjct: 275 RIRGKNIGECATLPVTELKLFVEKLDYPEVRP-----LLEALLERLDAMCAVGLGYLDLN 329

Query: 481 RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTV 540
           R+  +LSGGE+QR+++   +G+ L G++Y++DEPS GLH  D  +L   +  LR+ GNT+
Sbjct: 330 RTTPSLSGGESQRLKMVRHLGSSLTGIVYIIDEPSTGLHPADIVKLNVLIGKLRDKGNTI 389

Query: 541 LVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP 600
           L+VEHD D I +A+HVID+GPGAG  GG +V EG++  +     +LTG+Y S   +I   
Sbjct: 390 LMVEHDPDMIAIAEHVIDLGPGAGKQGGNIVFEGDLSAL-KQSQTLTGRYFSSRAEI--- 445

Query: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTA 660
               P+ AK  + ++ A  +NL N+ + +P+ +   VTGV+GSGKS+ +           
Sbjct: 446 -NNRPRCAKGYISVRNATLHNLHNLSVDVPLSVMVAVTGVAGSGKSSFVMGAL------- 497

Query: 661 LNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES 720
                 A   P             I IDQ PI  + RS+ A++ G F  IR LFA     
Sbjct: 498 ------APQCP-----------DAIVIDQKPIHTSIRSHIASWCGAFDTIRLLFA----- 535

Query: 721 RSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYK 780
                    FS N +G  C  C G GVI+ ++ F+  V +PC+ C+G+RY+ + L+ RY+
Sbjct: 536 EKNHVSASWFSANAKGA-CPECHGLGVIQTDLAFMDTVTLPCEACQGQRYSPQALKYRYQ 594

Query: 781 GKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLA 840
           GK I EVL +++ DA +FF   P +    ++L++VGL Y+RLG+S   LSGGE QR+KLA
Sbjct: 595 GKNIAEVLSLSINDAGDFFLNEPQLRPIFRSLVEVGLGYLRLGESLNHLSGGECQRLKLA 654

Query: 841 RELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWI 900
            +L+       +YI DEPTTGLH  D+  LL + +RL D GNTV++IEHN+++I  ADWI
Sbjct: 655 SQLNH---DSDMYIFDEPTTGLHPSDVASLLKLFNRLVDRGNTVIIIEHNMELIAQADWI 711

Query: 901 IDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
           ID+GP  GQ GG ++  GTPE +     S TA +L+
Sbjct: 712 IDIGPYAGQEGGKLLFSGTPESMLACRHSLTAEWLR 747



 Score =  115 bits (288), Expect = 1e-29
 Identities = 59/117 (50%), Positives = 82/117 (70%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D I++ GAR +NL++I+L +P++K+ V TG+SGSGKSSL F T+ AE QR+  ++   + 
Sbjct: 5   DAIKIIGARQNNLQDIDLEVPKNKITVFTGVSGSGKSSLVFGTIAAESQRQLNDTFPPFI 64

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEP 118
           R  L     P+VD IE LS AI I+QK    N RSTVGT +++Y  LRLL++RVGEP
Sbjct: 65  RHRLPHYGNPEVDDIENLSVAIIIDQKRIGGNARSTVGTASDIYTLLRLLFSRVGEP 121



 Score = 69.7 bits (169), Expect = 7e-16
 Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAP 671
           +++ GA  NNL+++DL +P    T  TGVSGSGKS+L+  T    +   LN     T  P
Sbjct: 7   IKIIGARQNNLQDIDLEVPKNKITVFTGVSGSGKSSLVFGTIAAESQRQLND----TFPP 62

Query: 672 Y----------RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESR 721
           +            +  +E+    I IDQ  IG   RS   T + I+T +R LF+   E  
Sbjct: 63  FIRHRLPHYGNPEVDDIENLSVAIIIDQKRIGGNARSTVGTASDIYTLLRLLFSRVGEP- 121

Query: 722 SRGYQPGRFSFNVRGGRCEACQGDGV 747
             GY    FSFN   G C  C G G+
Sbjct: 122 FVGYS-NVFSFNHPAGMCATCDGLGI 146



 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 30/110 (27%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I VR A  HNL N+++ +P   ++ +TG++GSGKSS     L                  
Sbjct: 456 ISVRNATLHNLHNLSVDVPLSVMVAVTGVAGSGKSSFVMGAL------------------ 497

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
                + PD         AI I+QK    + RS + +    +D +RLL+A
Sbjct: 498 ---APQCPD---------AIVIDQKPIHTSIRSHIASWCGAFDTIRLLFA 535