Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

 Score = 1564 bits (4050), Expect = 0.0
 Identities = 764/940 (81%), Positives = 849/940 (90%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIEVRGARTHNLKNINL IPRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE++DYLRLLYARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H VPL AQT+SQMVD VL  PEG ++MLLA I+KERKGEH KTLENLA QG+IRARID
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHNKTLENLAGQGYIRARID 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           GE CDL+DPPKLEL KKHTIEV++DRFKVR DL  RLAESFETALELSGG  +VA M+  
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLSTRLAESFETALELSGGTAIVANMDDP 240

Query: 241 -GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
             EE +FSANFACP CGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDP+RVIQ+  L
Sbjct: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVIQNPEL 300

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           SLA GAIRGWD++NFYYFQML +LAEHY+FDV  P+  L+  +Q+++L+GSG+  IEFKY
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLKSLAEHYEFDVEAPWGTLNSSVQKVVLYGSGKENIEFKY 360

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           +NDRGD  +++HPFEG+LHN+ERRY++TES++VREELAK+ISN+PC+SC+GTRLK EAR+
Sbjct: 361 MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCTSCEGTRLKREARH 420

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           VF+ +T LPTI ++SI  A+ FF  LKL GQRAQIAEKV+KEI DRL+FLVNVGLNYL L
Sbjct: 421 VFVENTPLPTISDMSIGHAMDFFNNLKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLTL 480

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TL HLRNLGNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT 540

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR ADHVIDIGPGAGVHGG VVAEG +E+I+A P SLTGQ++SG +KI V
Sbjct: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMAVPESLTGQFMSGKRKIEV 600

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P+QR P + +K ++L GA GNNLK+V L++PVGLFTC+TGVSGSGKSTLINDT F IA  
Sbjct: 601 PKQRVPANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
            LNGAT A PAPYR +QGLEHFDKVIDIDQSPIGRTPRSNPATYTG+FTP+RELFAG  E
Sbjct: 661 QLNGATIAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE 720

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           SRSRGY PGRFSFNVRGGRCEACQGDGVIKVEMHFLPD+YVPCD CKGKRYNRETLE++Y
Sbjct: 721 SRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGKTI EVLDMT+E+AREFFD VP +ARKLQTLMDVGL+YIRLGQSATTLSGGEAQRVKL
Sbjct: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           ARELSKR TG+TLYILDEPTTGLHF DIQQLL VLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADW 900

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           I+DLGPEGG GGG I+  GTPE VA+ EAS+TARFLKP+L
Sbjct: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940



 Score =  127 bits (319), Expect = 3e-33
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 15/194 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   +      +  +++++I +A  FF                +  + 
Sbjct: 762 PCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFD--------------AVPALA 807

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +LQ L++VGL Y+ L +SA TLSGGEAQR++LA ++     G  +Y+LDEP+ GLH  D
Sbjct: 808 RKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            ++LL+ L  LR+ GNT++V+EH+ D I+ AD ++D+GP  G  GG ++  G  E +   
Sbjct: 868 IQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAEC 927

Query: 583 PNSLTGQYLSGVKK 596
             S T ++L  + K
Sbjct: 928 EASYTARFLKPMLK 941