Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 990 a.a., excinuclease ABC subunit UvrA from Dyella japonica UNC79MFTsu3.2

 Score = 1342 bits (3473), Expect = 0.0
 Identities = 663/941 (70%), Positives = 780/941 (82%), Gaps = 3/941 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I +RGARTHNLKNI+L +PRD+LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLS+MEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H +PL+AQT+SQMVD  L L    + MLLA +++ERKGEHV+  E L AQGF+RAR+D
Sbjct: 121 PDHGIPLEAQTVSQMVDATLALDPEKRFMLLAPVIRERKGEHVQVFEQLRAQGFVRARVD 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPME-G 239
           G   +L   P L L +KHTIEV++DRF+ R D++QRLAESFETAL L  G+ ++A M+  
Sbjct: 181 GVVHELDAVPPLTLRQKHTIEVVIDRFRPRDDIKQRLAESFETALRLGDGLAILADMDDA 240

Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
              EQ+ S+ ++CP C YS+ ELEPRLFSFN+P GACPTCDGLGV Q FDP RV+    L
Sbjct: 241 KAPEQLLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPTCDGLGVTQVFDPARVVGHPEL 300

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
            L+ GAIRGWD++N +YFQ++ +LA HY FDV TP+ KL   +Q+ +L+GSG  +I+F+Y
Sbjct: 301 PLSGGAIRGWDRRNAHYFQLIISLASHYRFDVDTPWQKLPATVQKAVLYGSGNDKIQFRY 360

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           + +RG    ++H FEGIL NLERRY++TES +VREELAKYI++ PC  C G RL   ARN
Sbjct: 361 LTERGGKVTREHSFEGILPNLERRYKETESPAVREELAKYIADHPCPDCQGQRLNRSARN 420

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           VF+ D ALP++   SI DAL FF  L L G R +IA K++KEI +RL FL +VGLNYL L
Sbjct: 421 VFVADHALPSLTSRSIDDALGFFDTLTLTGWRGEIAVKIVKEIRERLSFLNDVGLNYLTL 480

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
            R A++LSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TLT LR+LGNT
Sbjct: 481 DRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNT 540

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR+ADHV+DIGPGAGVHGG VVA+G +++I+A+  S+TGQYLSG + I V
Sbjct: 541 VIVVEHDEDAIRLADHVLDIGPGAGVHGGEVVAQGTLKDILASKRSVTGQYLSGTRAIEV 600

Query: 600 P-EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH 658
           P E+R  +D    + L+GA GNNLKNVDL+IP GLFTC+TGVSGSGKSTLINDT F++A 
Sbjct: 601 PKERREQEDQDSWLHLRGASGNNLKNVDLAIPAGLFTCITGVSGSGKSTLINDTLFRLAA 660

Query: 659 TALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 718
             LNG ++  P+ Y+S++GL+ FDKV+DIDQSPIGRTPRSNPATYTG+FTP+REL+A   
Sbjct: 661 AELNG-SSEQPSAYKSVEGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELYAQVP 719

Query: 719 ESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVR 778
           E+RSRGY  GRFSFNVRGGRCEAC+GDG+IKVEMHFLPDVYVPCDVC GKRYNRETLE+ 
Sbjct: 720 EARSRGYTAGRFSFNVRGGRCEACEGDGMIKVEMHFLPDVYVPCDVCHGKRYNRETLEIT 779

Query: 779 YKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
           YKG TI +VL MTVEDA + F+ VP IARKL+TL  VGL YI+LGQSATTLSGGEAQRVK
Sbjct: 780 YKGHTIADVLGMTVEDALKLFENVPTIARKLETLRAVGLDYIKLGQSATTLSGGEAQRVK 839

Query: 839 LARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L++ELSKRDTG+TLYILDEPTTGLHFHDI+QLL VLH+L D GNTVVVIEHNLDVIKTAD
Sbjct: 840 LSKELSKRDTGRTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTAD 899

Query: 899 WIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           WI+DLGPEGG GGG I+  GTPE VA+   SHT RFL P L
Sbjct: 900 WIVDLGPEGGGGGGRILVAGTPETVAETAGSHTGRFLAPHL 940



 Score =  128 bits (321), Expect = 2e-33
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 15/218 (6%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   +      +  ++ +++ DAL  F+ +                I 
Sbjct: 762 PCDVCHGKRYNRETLEITYKGHTIADVLGMTVEDALKLFENVPT--------------IA 807

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +L+ L  VGL+Y+ L +SA TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D
Sbjct: 808 RKLETLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGRTLYILDEPTTGLHFHD 867

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            E+LL  L  L + GNTV+V+EH+ D I+ AD ++D+GP  G  GG ++  G  E +   
Sbjct: 868 IEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWIVDLGPEGGGGGGRILVAGTPETVAET 927

Query: 583 PNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGN 620
             S TG++L+    IA  + +    AK      GA  N
Sbjct: 928 AGSHTGRFLAPHLGIAPAKAQKDNAAKSGATKNGASKN 965