Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  941 bits (2432), Expect = 0.0
 Identities = 489/952 (51%), Positives = 652/952 (68%), Gaps = 31/952 (3%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I + GAR HNLKN+++ IPRD+L+V+ G SGSGKS+LAFD +YAEGQRRYVESLSAYARQ
Sbjct: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL  M+KP VD IEGLSPAIS+EQ++++ NPRSTVGT+TEVYD+LR+ YAR+G   CP+ 
Sbjct: 66  FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
             P++A+   +++  +L L EG++ +++A +V+ +KG H    + L A+GF+R R++GET
Sbjct: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGG-IVVVAPMEGDGE 242
             + D P L+ ++KH I+++VDR  V+  ++ RLA+S E AL    G +VV  P +G   
Sbjct: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVVEVPGQG--- 242

Query: 243 EQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLA 302
           E + S    CP C  S+    P+LFSFN+P GACP C GLG   YF+P  +  +  LSL 
Sbjct: 243 ETVHSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRGLSLN 302

Query: 303 QGAIRGWDQKNFY--YFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYI 360
            GA+  W     +  +   L  LA+ +   + TP +       E++ HG G   +     
Sbjct: 303 TGALLPWKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDG--SLPHAAA 360

Query: 361 NDRG-----DIRLKKHP-----------FEGILHNLERRYRDTESNSVREELAKYISNKP 404
            D G     D R K              + G+   LE   +    ++ R+E+++Y  ++P
Sbjct: 361 GDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQ--YGDAWRDEMSRYRQSRP 418

Query: 405 CSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIND 464
           C +C G RL+ EA +V ++D  + +   LS+A AL + +E   +G+   +AE ++KE+  
Sbjct: 419 CPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTH 478

Query: 465 RLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNE 524
           RL+F+VNVGL+Y++L R+  TLSGGEAQRIRLASQ+G+GLVGV YVLDEPSIGLH RDNE
Sbjct: 479 RLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRDNE 538

Query: 525 RLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPN 584
           RL++TL  L+  GNTVLVVEHDE  IR AD VI++GPG+G  GG VV  G V +++   +
Sbjct: 539 RLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTAD 598

Query: 585 SLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSG 644
           +LT +YL G   I +PE R   D   T  L+G   NNL+ +D SIP G+ TCVTGVSGSG
Sbjct: 599 TLTARYLRGEMTIPLPESRRKGDGALT--LRGVTTNNLQGLDCSIPFGVLTCVTGVSGSG 656

Query: 645 KSTLINDTFFKIAHTAL-NGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATY 703
           KS+L+ DT +K  H AL  G    +P     I GL+  ++++ IDQ+PIGRTPRSNPATY
Sbjct: 657 KSSLVVDTLYK--HVALARGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATY 714

Query: 704 TGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCD 763
           T IF  IR++FA T ++R RGY+PGRFSFNVRGGRCEAC GDG ++VEMHFLPDV+V CD
Sbjct: 715 TKIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVTCD 774

Query: 764 VCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLG 823
           VCKG+RYN ETLEVRYKG  I EVLD+TV  AR+FF+  PV+ R+L  L DVGL Y+RLG
Sbjct: 775 VCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLRLG 834

Query: 824 QSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNT 883
           Q ATTLSGGEAQR+K++REL KR    TLYILDEPTTGLH H++ +L+ VLH+L D G T
Sbjct: 835 QPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRGAT 894

Query: 884 VVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFL 935
           VVVIEHN DVI ++D +IDLGP GG+ GG I++ GTPE++    AS T  FL
Sbjct: 895 VVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFL 946



 Score =  123 bits (308), Expect = 6e-32
 Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 15/190 (7%)

Query: 761 PCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVE-----------DAREFFDPVPVI---A 806
           PC  C G R   E L VR     I     ++V            D R      P++    
Sbjct: 418 PCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELT 477

Query: 807 RKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHD 866
            +L+ +++VGL YI LG++ +TLSGGEAQR++LA +L     G T Y+LDEP+ GLH  D
Sbjct: 478 HRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRD 536

Query: 867 IQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQI 926
            ++L+  L RL+  GNTV+V+EH+   I+ AD +I+LGP  G  GG ++  G   D+   
Sbjct: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596

Query: 927 EASHTARFLK 936
             + TAR+L+
Sbjct: 597 ADTLTARYLR 606



 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 608 AKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTA 667
           +K  + ++GA  +NLKNVD+ IP      V G SGSGKSTL  D  +         + +A
Sbjct: 2   SKHCIHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSA 61

Query: 668 TPAPY------RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
               +       ++  +E     I ++Q    R PRS   T T ++  +R  +A
Sbjct: 62  YARQFLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYA 115