Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1173 bits (3034), Expect = 0.0
 Identities = 586/944 (62%), Positives = 734/944 (77%), Gaps = 8/944 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           + KIEVRGAR HNLK+I++ IPRD+L+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFL +M+KPDVDHI GLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+ARVG P  
Sbjct: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P   +P++AQ +  MVD+V+ + EG++  LLA I+++RKGE+ K    L  QGF R ++D
Sbjct: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVD 183

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVV--APME 238
           G   DL  PP L+   +H I+V+VDR  V+  ++ RLA+SF TAL+L+ GI ++  AP E
Sbjct: 184 GAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPTE 243

Query: 239 GDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDAN 298
           G+ E   FS  FACP  G+++ E+EPRLFSFN P GACP CDGLGV+ +FD   V+ DA 
Sbjct: 244 GEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLVVPDAT 303

Query: 299 LSLAQGAIRGWDQ-KNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEF 357
           L+LA GA+  W + K+ Y+ Q + A+A+HY+FD  TP+  L +K+QE+ L GSG  EI F
Sbjct: 304 LTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGEEEITF 363

Query: 358 KYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEA 417
           +Y ++ G +      FEG++ N+ERRYR+T+S+ +REE  +Y +N+ C +C G RL+ EA
Sbjct: 364 RY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGYRLRPEA 422

Query: 418 RNVFINDTALPTIVELSIADALTFFQELK--LEGQRAQIAEKVMKEINDRLQFLVNVGLN 475
             V I    +  +V++SI +A  + + +   L  Q+ +IA  ++KEI +RL FL NVGL 
Sbjct: 423 LAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFLNNVGLE 482

Query: 476 YLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRN 535
           YL LSR+A TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL +LR+
Sbjct: 483 YLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRD 542

Query: 536 LGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVK 595
            GNTV+VVEHDE+A+R AD+V DIGPGAGVHGG VVA G   +I+ANP S+TG YL+G +
Sbjct: 543 QGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGDYLAGRR 602

Query: 596 KIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFK 655
           +I VP  R  K  KK V ++ A GNNL+++ +  P+G F CVTGVSG GKSTL  +T FK
Sbjct: 603 EIPVPATRR-KGNKKKVTVRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFK 661

Query: 656 IAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
            A   LNGA   TPAP  +I+GLEH DKVIDIDQ PIGRTPRSNPATYTG FTPIR+ FA
Sbjct: 662 TASMRLNGARQ-TPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFA 720

Query: 716 GTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETL 775
           G  E+R+RGY+PGRFSFNV+GGRCEACQGDGVIK+EMHFLPDVYV C+ CKGKRYNRETL
Sbjct: 721 GLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGKRYNRETL 780

Query: 776 EVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQ 835
           EV +KGK+I +VLDMTVEDA+EFF  VP I  K+  LM VGL YI++GQ ATTLSGGEAQ
Sbjct: 781 EVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQ 840

Query: 836 RVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIK 895
           RVKL++EL+KR TG+TLYILDEPTTGLHF D+++LL VLH L + GNTVVVIEHNLDVIK
Sbjct: 841 RVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNTVVVIEHNLDVIK 900

Query: 896 TADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           TADW+ID+GPEGG GGG ++A GTPE VA++  SHT R+LKP+L
Sbjct: 901 TADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPML 944