Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1949 a.a., excinuclease ABC subunit UvrA from Ralstonia sp. UNC404CL21Col
Score = 631 bits (1628), Expect = 0.0
Identities = 392/1003 (39%), Positives = 550/1003 (54%), Gaps = 97/1003 (9%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLKN++L + ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 6 IRLRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
FL M++P V+H+EG+ PAI+I+Q + + RSTVGT+TE+ D+L+LL+AR + E
Sbjct: 66 FLDRMDRPQVEHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAAQLFDRET 125
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKE--RKGEHVKTLENLAAQGFIRARIDG 181
+P++ T + D++L L+ T E + + L+ G+ R + +
Sbjct: 126 ALPVRHDTPETIYDELLSRTREGDPRLVVTFPVELPANTSPEEVTQWLSVSGYTRVQAER 185
Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGG--IVVVAPMEG 239
T KL ++V+ DRF+++ + R E+ E++L+ GG V V P +
Sbjct: 186 VVESSTGKRKL-------LDVVADRFRLQGTERARALEAIESSLKRGGGRVSVYVLPADE 238
Query: 240 DGEEQI--FSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDA 297
E I FS CP + +P LFSFN+ GAC C G G D VI D
Sbjct: 239 GAEPTIWRFSTGLHCPESDLRYADPQPALFSFNSAYGACDACRGFGRVIGVDLGLVIPDE 298
Query: 298 NLSLAQGAIRGWDQKNFYYFQ-MLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIE 356
+L GAI+ + Q L A D TP+ ++++ + +++
Sbjct: 299 RKTLRDGAIKPMQTPAWKECQDDLMRYAAAADIPRGTPWAEMTEAQRNWVIN-------- 350
Query: 357 FKYINDRGDIRLKKHPFEGILHNLERRYRDTESNS----VREELAKYISNKPCSSCDGTR 412
GD K+ + + + R + ES + +R L+KY S C +C G R
Sbjct: 351 -------GDPAFKRGGWNKQWYGVRRFFDYLESKAYKMHIRVLLSKYRSYTTCETCGGAR 403
Query: 413 LKIEA-----------------------RNVFINDTALPTIVELSIADAL--------TF 441
LK E+ R V + L + L++ D + F
Sbjct: 404 LKTESMQWRLGTKENADAVLAPEHRFMPRGVAWSRAQLEALPGLTVHDLMLLPIERIRRF 463
Query: 442 FQELKLEGQRAQIAEK-VMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQI 500
F EL L A K ++ E+ RL +L +VG+ YL L R + TLSGGE QRI L + +
Sbjct: 464 FDELTLPSTLLDDALKLLLDEVRTRLAYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTAL 523
Query: 501 GAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIG 560
G LV ++VLDEPSIGLH RD +R++Q + LR+ GNT++VVEHD + AD +ID+G
Sbjct: 524 GTSLVNTLFVLDEPSIGLHPRDLDRIVQAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMG 583
Query: 561 PGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP---EQRTPKDAKKTVELKGA 617
PG G GG +V +G I ++LTG YLSG +++A + R DA + L+GA
Sbjct: 584 PGPGERGGNIVFDGTPAS-IRQADTLTGAYLSGQRRVADATDWQARPVNDATPRLVLEGA 642
Query: 618 VGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN---GATTATPAPYRS 674
+NL++V + IP+ CVTGVSGSGKSTLI D + H AL G T +P +R+
Sbjct: 643 SEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLIQD----VLHPALARHFGKATESPGAFRA 698
Query: 675 IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNV 734
++G + V+ +DQSPIG+T RSNPA+Y G F IR+LFA + RGY G FSFN
Sbjct: 699 LRGADQISDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRGYTAGTFSFNS 758
Query: 735 RGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY----KGKTIDEVLDM 790
GRC C G G VEM FL D+Y+ C C G RY E LEV+ + ++ +VL++
Sbjct: 759 GDGRCPTCGGSGFEHVEMQFLSDIYLRCPDCDGTRYRAEILEVKLPRGGRALSVADVLEL 818
Query: 791 TVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL----------- 839
TV +A F + R LQ ++DVGL Y++LGQ TLSGGEAQR+KL
Sbjct: 819 TVSEAASVFAEDADVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQAA 878
Query: 840 ---ARELSKRD---TGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDV 893
AR+ K+D L++ DEPTTGLHF DI +L+ +L D G++++VIEHNLDV
Sbjct: 879 QAAARKRVKQDVPANAGRLFMFDEPTTGLHFDDIAKLMRAFGKLLDAGHSLIVIEHNLDV 938
Query: 894 IKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
++ ADWIIDLGPEGG GGL++ GTP V ASHT LK
Sbjct: 939 VRAADWIIDLGPEGGDAGGLLVCAGTPAQVKDCAASHTGAALK 981
Score = 517 bits (1331), Expect = e-150
Identities = 278/585 (47%), Positives = 370/585 (63%), Gaps = 45/585 (7%)
Query: 400 ISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVM 459
+++ PC C GTRL AR V D + I + +++ + + L L G+ A IA V+
Sbjct: 1350 MTDLPCPDCHGTRLNPTARAVTFADKPIVDIAQWTVSQTRRWVEGLDLTGRDADIARDVV 1409
Query: 460 KEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLH 519
EI+ RL FL VGL YL+L R+A +LSGGEAQRIRLA+Q+G+ L GV YVLDEP+IGLH
Sbjct: 1410 AEIHSRLSFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLH 1469
Query: 520 QRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEI 579
RDN+ LL L L + GNT++VVEHDED IR ADH+IDIGPGAG GG +VA+G V ++
Sbjct: 1470 PRDNQILLDALRKLGDKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGGVADL 1529
Query: 580 IANPNSLTGQYLSGV--------KKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPV 631
A P+SLTG++LS +++ P ++ + + GA +NL+NV ++P+
Sbjct: 1530 AAQPDSLTGRFLSQPIEHPLQPRRQVIAPHAGKQAVPEQWLTVHGAKLHNLRNVTATMPL 1589
Query: 632 GLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRS----------------- 674
+TGVSGSGKSTL D A+ + ++PA R+
Sbjct: 1590 SRLVAITGVSGSGKSTLARDVLMTNLLDAVGRSVLSSPATRRARKAAQAETPEAKMPRKL 1649
Query: 675 -----------IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSR 723
+ G E D+V+++DQ+PIG+TPRS PATY G++ IR+LFA T E+R+R
Sbjct: 1650 DVKHDWHGCDNVTGWETIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFADTLEARAR 1709
Query: 724 GYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKT 783
GY RFSFN GRC AC+G GV + M FLPDV V CDVC G+R+N ETL V ++GK
Sbjct: 1710 GYTASRFSFNTGDGRCPACEGQGVRTIAMSFLPDVKVGCDVCHGQRFNAETLAVTWRGKN 1769
Query: 784 IDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAREL 843
I +VL M +++A EFF + IA LQ + DVGL Y+ LGQ + TLSGGEAQR+KL EL
Sbjct: 1770 IGDVLTMEIDEAVEFFGAMNSIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTEL 1829
Query: 844 SK---------RDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVI 894
SK + TLY+LDEPT GLH D+ +L+ VLHRL D G++V+VIEH+LDVI
Sbjct: 1830 SKVRDDVTRRGQKAPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVIVIEHDLDVI 1889
Query: 895 KTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
ADWI+DLGPEGG GG I+A PE + ++ ASHT L P+L
Sbjct: 1890 AEADWILDLGPEGGDEGGTIVAACGPEALTRVAASHTGAALVPVL 1934
Score = 207 bits (527), Expect = 5e-57
Identities = 113/294 (38%), Positives = 172/294 (58%), Gaps = 13/294 (4%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ + A HNLK +N+ IP K V+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYAR
Sbjct: 1021 VRIVHAHEHNLKGLNVDIPHGKFNVVTGVSGSGKSTLAFDILFHEGQRRYLESLNAYARS 1080
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
+ +P+VD + G+ P ++IEQ+ + +STV T +EV+ +LRLLY ++G C
Sbjct: 1081 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGVQHCIHD 1140
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
P+ AQ+ + +++ G + LLA +V RKG + + A+G+ R+DGE
Sbjct: 1141 GTPVSAQSPEAIFAQLMRDHRGQHIGLLAPLVVNRKGVYTDLAKWAKARGYTHLRVDGEF 1200
Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIV-VVAPMEG--- 239
+ P+L+ ++HT+E+ V V + + L E ALE GI+ V+AP++G
Sbjct: 1201 LSVDPWPRLDRFREHTLELPVGDIVVSPENEAALRALLEQALEYGKGIMHVLAPLDGLQH 1260
Query: 240 ---------DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGV 284
G ++FS AC CG S EL+PR+FS+N+ G CP+C G G+
Sbjct: 1261 AMHNGGTAHVGNVKVFSTKRACSTCGTSYPELDPRMFSYNSKHGWCPSCVGTGL 1314
Score = 128 bits (321), Expect = 4e-33
Identities = 92/292 (31%), Positives = 144/292 (49%), Gaps = 56/292 (19%)
Query: 405 CSSCDGTRLKIEARNVFI----NDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMK 460
C CDGTR + E V + ++ ++EL++++A + F E
Sbjct: 786 CPDCDGTRYRAEILEVKLPRGGRALSVADVLELTVSEAASVFAE--------------DA 831
Query: 461 EINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGL---------------- 504
++ LQ +V+VGL Y+ L + TLSGGEAQR++LA +
Sbjct: 832 DVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQAAQAAARKRVKQDVP 891
Query: 505 --VGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPG 562
G +++ DEP+ GLH D +L++ L + G++++V+EH+ D +R AD +ID+GP
Sbjct: 892 ANAGRLFMFDEPTTGLHFDDIAKLMRAFGKLLDAGHSLIVIEHNLDVVRAADWIIDLGPE 951
Query: 563 AGVHGGMVVAEGNVEEIIANPNSLTG----QYLSGVKK----------IAVPEQRTPKDA 608
G GG++V G ++ S TG QY + V + A+ E+R + A
Sbjct: 952 GGDAGGLLVCAGTPAQVKDCAASHTGAALKQYEASVGQPEAIEGVPLQTALAERRAKRAA 1011
Query: 609 ------KKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF 654
+ V + A +NLK +++ IP G F VTGVSGSGKSTL D F
Sbjct: 1012 LAEVQGENVVRIVHAHEHNLKGLNVDIPHGKFNVVTGVSGSGKSTLAFDILF 1063
Score = 60.1 bits (144), Expect = 1e-12
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLY-----AEGQRRYVESLS 58
+ V GA+ HNL+N+ T+P +L+ ITG+SGSGKS+LA D L A G+ +
Sbjct: 1570 LTVHGAKLHNLRNVTATMPLSRLVAITGVSGSGKSTLARDVLMTNLLDAVGRSVLSSPAT 1629
Query: 59 AYARQF-------LSLMEKPDVDH----------IEGLSPAISIEQKSTSHNPRSTVGTI 101
AR+ + K DV H E + + ++Q PRS T
Sbjct: 1630 RRARKAAQAETPEAKMPRKLDVKHDWHGCDNVTGWETIDRVLEVDQTPIGKTPRSCPATY 1689
Query: 102 TEVYDYLRLLYARVGEPR 119
V+D +R L+A E R
Sbjct: 1690 IGVWDTIRKLFADTLEAR 1707
Score = 55.5 bits (132), Expect = 3e-11
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
++ + GA HNL+++ + IP +L+ +TG+SGSGKS+L D L+ A AR
Sbjct: 636 RLVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLIQDVLH-----------PALAR 684
Query: 63 QFLSLMEKPD----VDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYAR 114
F E P + + +S + ++Q RS + +D +R L+A+
Sbjct: 685 HFGKATESPGAFRALRGADQISDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAK 740
Score = 29.6 bits (65), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 267 FSFNNPAGACPTCDGLGVQ 285
FSFN G CP C+G GV+
Sbjct: 1716 FSFNTGDGRCPACEGQGVR 1734