Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 889 a.a., excinuclease ABC subunit A from Paraburkholderia bryophila 376MFSha3.1

 Score =  478 bits (1231), Expect = e-139
 Identities = 280/747 (37%), Positives = 399/747 (53%), Gaps = 81/747 (10%)

Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
           FS N   GACPTC GLG         ++ D +L++ + AI  W     ++ Q L  +   
Sbjct: 148 FSPNTVQGACPTCHGLGRVYEVTESSMVPDDSLTIRERAIAAWPPA--WHGQNLRDILVT 205

Query: 327 YDFDVHTPFNKLSKKIQEIILHG---------SGRTEIEFKYINDRGDIRLKKHPFEGIL 377
             +DV TP+  L KK ++ IL           +G T  E +    R D    +  F G  
Sbjct: 206 LGYDVDTPWRDLPKKDRDWILFTDEQPTVPVYAGLTPKETRAALKRKDEPSYQGTFTGAR 265

Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIAD 437
             +   + +T+S  +++ ++KY+ +  C  C G RL  EA +V      +  + +L ++ 
Sbjct: 266 RYVLHTFANTQSALMKKRVSKYMVSSDCPECGGKRLTKEALSVKFAGLDIAELSQLPLSG 325

Query: 438 ALTFFQEL-------------------------------------------------KLE 448
                + +                                                  L 
Sbjct: 326 LAALLEPVARGEWQEPVEVPRGKGDVLSRSAMRDAVERRVAAGGSAHKASPDVRRTPNLS 385

Query: 449 GQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVM 508
           G++   A+++  E+ +RL  L+++GL YL+L RS  TLS GE QR+RLA+Q+ + L GV+
Sbjct: 386 GEKRLAAQRIAAELQERLTTLIDLGLGYLSLDRSTPTLSSGELQRLRLATQLSSQLFGVV 445

Query: 509 YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGG 568
           YVLDEPS GLH  D E L   L  L+  GN++ VVEHD   +R AD ++D+GP AG  GG
Sbjct: 446 YVLDEPSAGLHPADGEALFSALQALKAAGNSLFVVEHDLQMMRRADWLVDVGPAAGEEGG 505

Query: 569 MVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPE--QRTPKDAKKTVELKGAVGNNLKNVD 626
            +V  G  + + A   S T ++L      A P   +RT +DAK  + L G   NNL  ++
Sbjct: 506 HIVYSGPPDGLAAVEASQTRRHL-----FAPPASVERTQRDAKGWLRLAGITRNNLHGLN 560

Query: 627 LSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATT--------------ATPAPY 672
           ++  +G  T VTG+SGSGKS+L++    ++  + L  A                  PA  
Sbjct: 561 VAFALGCLTTVTGISGSGKSSLVSLALPELVASRLGKAIENPDDDEQDPLLADGGMPASG 620

Query: 673 RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSF 732
             + G+E   +++ +DQ PIGRTPRSN ATYTG+F  +R+LFA T  +R R Y  GRFSF
Sbjct: 621 HIVDGMESIRRLVRVDQKPIGRTPRSNLATYTGLFDQVRKLFADTPAARKRRYSAGRFSF 680

Query: 733 NVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTV 792
           NV  GRC  C+G+G + VE+ FLP VY PC  C G RYN  TLE+ ++ K I +VL +TV
Sbjct: 681 NVAQGRCPTCEGEGFVSVELLFLPSVYAPCTTCHGTRYNESTLEITWRDKNIAQVLGLTV 740

Query: 793 EDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTL 852
           + A  FF   P + R L  L D+GL Y+RLGQ AT LSGGEAQR+KLA EL +   G TL
Sbjct: 741 DAACSFFADQPGVMRSLTALRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTL 800

Query: 853 YILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGG 912
           YILDEPTTGLH  D+ +L+  L  L D GNTVV +EH++ V   +DW+ID+GP  G  GG
Sbjct: 801 YILDEPTTGLHPADVDRLMVQLQGLVDAGNTVVAVEHDMRVAAQSDWVIDVGPGAGDAGG 860

Query: 913 LIIAEGTPEDVAQIEASHTARFLKPLL 939
            I+  G P +VA+ + S TA +++  L
Sbjct: 861 TIVVSGRPAEVARKKESRTAAYIRQQL 887



 Score =  133 bits (334), Expect = 6e-35
 Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 9/164 (5%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + VRGAR HNLKN+++ IPRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 22  VSVRGAREHNLKNVDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 81

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG--EPRCP 121
            +  +  P+VD IEGL PA++++Q+  + + RS+VG++T +   +R+LY+R G   P+ P
Sbjct: 82  LIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSTLVRMLYSRTGTYPPKQP 141

Query: 122 ----EHQVPLKAQ---TISQMVDKVLELPEGSKMMLLATIVKER 158
               EH  P   Q        + +V E+ E S +   +  ++ER
Sbjct: 142 MLFAEHFSPNTVQGACPTCHGLGRVYEVTESSMVPDDSLTIRER 185



 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAP 671
           V ++GA  +NLKNVD+ IP       TGVSGSGKS+L   T +  A          + AP
Sbjct: 22  VSVRGAREHNLKNVDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRY----FESVAP 77

Query: 672 YR----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA--GTQE 719
           Y            +  +E     + + Q     + RS+  + T + T +R L++  GT  
Sbjct: 78  YARRLIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSTLVRMLYSRTGTYP 137

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVI--KVEMHFLPD 757
            +        FS N   G C  C G G +    E   +PD
Sbjct: 138 PKQPMLFAEHFSPNTVQGACPTCHGLGRVYEVTESSMVPD 177



 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSL---AFDTLYAEGQRRYVESLSAY 60
           + + G   +NL  +N+      L  +TG+SGSGKSSL   A   L A    + +E+    
Sbjct: 546 LRLAGITRNNLHGLNVAFALGCLTTVTGISGSGKSSLVSLALPELVASRLGKAIENPDDD 605

Query: 61  ARQFLSL-----MEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
            +  L            VD +E +   + ++QK     PRS + T T ++D +R L+A
Sbjct: 606 EQDPLLADGGMPASGHIVDGMESIRRLVRVDQKPIGRTPRSNLATYTGLFDQVRKLFA 663