Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 957 a.a., Excinuclease ABC subunit A from Paraburkholderia bryophila 376MFSha3.1

 Score = 1303 bits (3373), Expect = 0.0
 Identities = 649/953 (68%), Positives = 784/953 (82%), Gaps = 17/953 (1%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +++I +RGARTHNLKN+NL +PR KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   VEQIRIRGARTHNLKNVNLDLPRHKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFL LMEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TE++DYLRLL+ARVG P C
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPYC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARI- 179
           P+H++PL+AQ++SQMVD  L LPE +++M+LA +V +RKGEHV+  E + AQGFIR R+ 
Sbjct: 121 PDHEIPLEAQSVSQMVDAALALPEETRLMILAPVVADRKGEHVELFEEMQAQGFIRFRVR 180

Query: 180 -DGETC--------DLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGG 230
             G T         ++   PKL+ + KHTI+V+VDR KVR D++QRLAESFETAL L+ G
Sbjct: 181 SGGGTANEGAAKIYEVDSLPKLKKNDKHTIDVVVDRLKVRPDMKQRLAESFETALRLADG 240

Query: 231 IVVVAPMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDP 290
             +   M+ D ++ +FS+ FACP C YS++ELEPRLFSFNNP GACP CDGLG   +FDP
Sbjct: 241 RAIALEMDTD-KQHLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFFDP 299

Query: 291 DRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGS 350
            RV+   +LSLA GA++GWD++N +YFQML +LA  YDFD+ T    L +K+++I+L GS
Sbjct: 300 KRVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAAFYDFDIDTAVEDLPEKVRKILLFGS 359

Query: 351 GRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDG 410
           G+ EI F YIN+RG   +++H FEGI+ NLERRYR+T+S +VREELAKY +N+PC +C G
Sbjct: 360 GKQEIPFSYINERGRTSVREHVFEGIIPNLERRYRETDSAAVREELAKYQNNQPCPACAG 419

Query: 411 TRLKIEARNVFIN-DTALPTIVELS---IADALTFFQELKLEGQRAQIAEKVMKEINDRL 466
           TRL+ EAR V I  D     I E+S   + DAL +FQ L+LEG + +IA+KV+KEI  RL
Sbjct: 420 TRLRREARFVRIGTDGDARGIYEISGWPLRDALGYFQTLRLEGSKREIADKVVKEIVARL 479

Query: 467 QFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERL 526
            FL NVGL+YL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+RL
Sbjct: 480 MFLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL 539

Query: 527 LQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSL 586
           + TL HLR+LGN+V+VVEHDED IRMAD+V+D+GPGAG HGGMV+AEG  +++  NP S+
Sbjct: 540 IATLKHLRDLGNSVIVVEHDEDMIRMADYVVDMGPGAGEHGGMVIAEGTPKQVQGNPASM 599

Query: 587 TGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKS 646
           TGQY+SG + I  P++R   D ++ + +  A GNNL++V L +PVGL TCVTGVSGSGKS
Sbjct: 600 TGQYMSGARTIEYPDERKDPD-ERHLRIVEAHGNNLRHVTLDLPVGLLTCVTGVSGSGKS 658

Query: 647 TLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGI 706
           TLINDT +      L G++T  PAPY SI+GLEHFDKVI++DQSPIGRTPRSNPATYTG+
Sbjct: 659 TLINDTLYHAVSHHLYGSSTE-PAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATYTGL 717

Query: 707 FTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCK 766
           FTPIRELFAG   ++ RGY PGRFSFNV+GGRCE+CQGDGV+KVEMHFLPDVYVPCDVC 
Sbjct: 718 FTPIRELFAGVPAAKERGYDPGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDVCH 777

Query: 767 GKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSA 826
           GKRYNRETL+V+YKGK I EVLDMTVE A EFF PVPV+ARKL+TL+DVGL YIRLGQSA
Sbjct: 778 GKRYNRETLDVQYKGKNISEVLDMTVEHAYEFFKPVPVVARKLKTLLDVGLGYIRLGQSA 837

Query: 827 TTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVV 886
           TTLSGGEAQRVKL+ ELSKRDTG+TLYILDEPTTGLHFHDI  LL V+HRLRD GNTVV+
Sbjct: 838 TTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNTVVI 897

Query: 887 IEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           IEHNLDVIKTADW+ID+GPEGG GGG IIA+GTPE +A+ +AS T R+L PLL
Sbjct: 898 IEHNLDVIKTADWVIDMGPEGGAGGGQIIAQGTPEQIAKSKASFTGRYLAPLL 950



 Score =  134 bits (338), Expect = 2e-35
 Identities = 72/200 (36%), Positives = 117/200 (58%), Gaps = 15/200 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E  +V      +  ++++++  A  FF+ + +  ++            
Sbjct: 772 PCDVCHGKRYNRETLDVQYKGKNISEVLDMTVEHAYEFFKPVPVVARK------------ 819

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
             L+ L++VGL Y+ L +SA TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D
Sbjct: 820 --LKTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHD 877

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
              LL+ +  LR+ GNTV+++EH+ D I+ AD VID+GP  G  GG ++A+G  E+I  +
Sbjct: 878 IALLLEVIHRLRDQGNTVVIIEHNLDVIKTADWVIDMGPEGGAGGGQIIAQGTPEQIAKS 937

Query: 583 PNSLTGQYLSGVKKIAVPEQ 602
             S TG+YL+ + K A  ++
Sbjct: 938 KASFTGRYLAPLLKRAASKK 957